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Table 5 Details on marker groups (MGs) for multiplex assays for assessing purity of two hybrids

From: Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.)

Hybrid/Marker
group ID
Number of
markers
Marker names
ICPH 2671a   
MG 1 7 CcM0724:CcM2626:CcM2300:CcM1837:CcM1565:CcM3024:CcM1246
MG 2 7 CcM2350:CcM0737:CcM2517:CcM1825:CcM2228:CcM0516:CcM0171
MG 3 6 CcM2802:CcM2704:CcM2097:CcM0021:CcM1459:CcM0752
MG 4 6 CcM1895:CcM2076:CcM2948:CcM1707:CcM2257:CcM2281
MG 5 5 CcM1232:CcM1053:CcM1139:CcM2401:CcM0207
MG 6 4 CcM2370:CcM0374:CcM0257:CcM0246
MG 7 2 CcM1984:CcM0252
MG 8 2 CcM1385:CcM2453
MG 9 2 CcM1559:CcM0948
ICPH 2438   
MG 1 8 CcM1825:CcM0878:CcM2672:CcM0057:CcM1713:CcM1651:CcM1647:CcM2330
MG 2 6 CcM1338:CcM1669:CcM2492:CcM2413:CcM0858:CcM1251
MG 3 5 CcM0121:CcM0008:CcM0257:CcM2380:CcM1371
MG 4 5 CcM1559:CcM2241:CcM1895:CcM0402:CcM1406
MG 5 4 CcM2386:CcM2449:CcM1565:CcM0207
MG 6 2 CcM0522:CcM1438
MG 7 2 CcM2164:CcM2781
MG 8 2 CcM0133:CcM0195
MG 9 2 CcM0481:CcM2595
MG10 2 CcM0948:CcM1282
MG11 2 CcM1616:CcM0252
MG12 2 CcM2982:CcM1078
  1. aOut of 42 informative markers identified for ICPH 2671, only 41 primers could be grouped in different multiplexes and the marker CcM1277 could not be multiplexed in any marker group.