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Table 3 Distribution of polymorphic markers into different repeat classes

From: Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.)

SSR type Repeat classes Number of markers
synthesized
Number of markers
amplified
Number of polymorphic
markers
PIC value Number of
alleles
Compound   657 626 (95.28%) 227 (36.26%) 0.08-0.88(0.58) 2-12 (5.74)
Perfect       
Class I       
  NN 639 592 (92.64%) 236 (39.86%) 0.08-0.90 (0.60) 2-14 (6.55)
  NNN 200 194 (97%) 66 (34.02%) 0.08-0.85 (0.60) 2-13 (5.87)
  NNNN 62 61(98.38%) 14 (22.95%) 0.28-0.81 (0.50) 3-9 (4.71)
  NNNNN 10 10 (100%) 2 (20%) 0.52-0.76 (0.64) 5-7 (6)
  NNNNNN 43 43 (100%) 10 (23.25%) 0.52-0.76 (0.64) 2-7 (4.4)
  Total 954 900 (94.33%) 328 (36.44%)   
Class II       
  NN 1,006 987 (98.11%) 219 (22.18%) 0.08-0.83 (0.53) 2-9 (4.9)
  NNN 455 451 (99.12%) 68 (15.07%) 0.08-0.74 (0.48) 2-6 (4.4)
  Total 1,461 1,438 (98.42%) 287 (19.95%)   
  Grand Total 3,072 2,964 (96.48%) 842 (28.40%)