Table 3 Distribution of polymorphic markers into different repeat classes
SSR type | Repeat classes | Number of markers synthesized | Number of markers amplified | Number of polymorphic markers | PIC value | Number of alleles |
|---|---|---|---|---|---|---|
Compound | 657 | 626 (95.28%) | 227 (36.26%) | 0.08-0.88(0.58) | 2-12 (5.74) | |
Perfect | ||||||
Class I | ||||||
NN | 639 | 592 (92.64%) | 236 (39.86%) | 0.08-0.90 (0.60) | 2-14 (6.55) | |
NNN | 200 | 194 (97%) | 66 (34.02%) | 0.08-0.85 (0.60) | 2-13 (5.87) | |
NNNN | 62 | 61(98.38%) | 14 (22.95%) | 0.28-0.81 (0.50) | 3-9 (4.71) | |
NNNNN | 10 | 10 (100%) | 2 (20%) | 0.52-0.76 (0.64) | 5-7 (6) | |
NNNNNN | 43 | 43 (100%) | 10 (23.25%) | 0.52-0.76 (0.64) | 2-7 (4.4) | |
Total | 954 | 900 (94.33%) | 328 (36.44%) | |||
Class II | ||||||
NN | 1,006 | 987 (98.11%) | 219 (22.18%) | 0.08-0.83 (0.53) | 2-9 (4.9) | |
NNN | 455 | 451 (99.12%) | 68 (15.07%) | 0.08-0.74 (0.48) | 2-6 (4.4) | |
Total | 1,461 | 1,438 (98.42%) | 287 (19.95%) | |||
Grand Total | 3,072 | 2,964 (96.48%) | 842 (28.40%) |