Table 2 Annotation of sRNAs sequences from SP and FP.
From: Differential miRNA expression in Rehmannia glutinosaplants subjected to continuous cropping
Category | Unique signatures | Total signatures | Mean frequency | |||
|---|---|---|---|---|---|---|
| Â | FP | SP | FP | SP | FP | SP |
Non-protein-coding RNAs | 62,829 (0.93%) | 48,587(0.63%) | 624,301(4.26%) | 483062 (3.08%) | 9.94 | 9.94 |
rRNA | 52,498 (0.78%) | 39,983 (0.51%) | 472,541 (3.23%) | 346,969 (2.22%) | 9 | 8.68 |
snRNA | 1,461(0.02%) | 1,304 (0.02%) | 2,607 (0.02%) | 2,158 (0.01%) | 1.78 | 1.66 |
snoRNA | 542 (0.01%) | 513 (0.01%) | 731 (0.00%) | 709 (0.00%) | 1.35 | 1.38 |
tRNA | 8,328 (0.12%) | 6,787(0.09%) | 148,422 (1.01%) | 133,226 (0.85%) | 17.82 | 19.63 |
Known miRNAs | 300 (0.00%) | 251(0.00%) | 282,063 (1.93%) | 118,011 (0.75%) | 940.21 | 470.16 |
Matched to A. thaliana genome | 3,158 (0.05%) | 3,269 (0.04%) | 7,341 (0.05%) | 7,468 (0.04%) | 2.32 | 2.28 |
Other sRNAs | 6,682,711 (90.01%) | 7,842,554 (99.36%) | 13,717,176 (93.76%) | 15,035,793 (96.12%) | 2.05 | 1.92 |
Total | 6,748,998 (100%) | 7,894,661 (100%) | 14,630,881 (100%) | 15,644,334 (100%) | 2.17 | 1.98 |