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Table 4 Identified targets of new miRNAs in soybean

From: Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing

miRNA Target gene Target annotation Class Abundance(TP10M) cleavage site(nt) Target site location
Soy_2 Glyma17g02170 F-box protein II 15 67 CDS
Soy_3 Glyma07g39750# PPR-containing protein II 19 1633 CDS
  Glyma17g01050# PPR-containing protein III 19 1659 CDS
Soy_4 Glyma04g03110 oxidoreductase IV 13 447 CDS
Soy_5 Glyma12g30680 60S ribosomal protein III 17 643 5'UTR
Soy_7 Glyma16g25990 G-protein II 15 1780 CDS
  Glyma19g37520 copper ion binding protein IV 15 684 CDS
Soy_8 Glyma19g28990# tubulin III 17 920 CDS
  Glyma16g04420# polyubiquitin protein III 17 931 CDS
Soy_9 Glyma11g37920 HD-ZIP transcription factor IV 19 629 CDS
Soy_10 Glyma19g22900 methyltransferase IV 17 936 5'UTR
Soy_11 Glyma05g26750# endomembrane protein II 27 1407 CDS
  Glyma08g09740# endomembrane protein II 27 1416 CDS
  Glyma17g14370 ribosomal protein IV 19 257 CDS
Soy_16 Glyma09g30740# PPR-containing protein I 14 616 CDS
  Glyma09g30680# PPR-containing protein IV 14 460 CDS
Soy_17 Glyma02g14400 expressed protein III 15 955 5'UTR
Soy_19 Glyma19g35560# Heat shock cognate protein IV 47 282 CDS
  Glyma03g32850# Heat shock cognate protein IV 47 480 CDS
Soy_21 Glyma15g04010* Transcription factor IIA IV 14 694 CDS
  Glyma13g41390* Transcription factor IIA IV 14 1348 5'UTR
  Glyma19g03770 transferase protein IV 14 746 CDS
  Glyma03g41900 bHLH family transcription factor II 55 1184 CDS
Soy_22 Glyma19g41650 peptide chain release factor IV 15 1258 5'UTR
Soy_25 Glyma05g33260 suppressor of gene silencing II 30 555 CDS
  1. CDS: coding sequence; UTR: untranslated region; TP10M: transcripts per 10 million; Cleavage site: nucleotide number from 5' end of cDNA; Adjacent target genes with same # or * were matched by identical reads.