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Table 4 Synonymous and nonsynonymous substitution rates in various comparisons among different cotton species

From: Structure, expression differentiation and evolution of duplicated fiber developmental genes in Gossypium barbadense and G. hirsutum

Gene

Ka/Ks/Ka:Ks ratio

 

A1 VS D5

A1 VS Ath

D5 VS Dth

A1 VS Atb

D5 VS Dtb

Ath VS Dth

Atb VS Dtb

BG

0.0081/0.0360/0.2243

9.75E-05/0.0098/0.001

0.0025/0.0362/0.0694

1.24E-05/0.0124/0.001

0.0029/0.0135/0.2127

0.0048/0.0282/0.1694

0.0076/0.0403/0.1875

Pel

0.0021/0.0910/0.0228

0.0024/0.0204/0.1198

0.0021/0.0041/0.5064

0.0012/0.0111/0.1106

0.0021/0.0041/0.5064

0.0022/0.0542/0.0398

0.0032/0.0912/0.0348

ManA2

0.0061/0.0218/0.2798

0.0041/0.0137/0.2960

0.0031/0.0085/0.3613

0.0040/0.0164/0.2419

0.0034/0.0076/0.4475

0.0049/0.0177/0.2769

0.0077/0.0183/0.4179

POD2

0.0119/0.0218/0.5457

0.0075/0.0069/1.0812

0.0113/0.0164/0.6852

0.0086/0.0195/0.4392

0.0131/0.0192/0.6829

0.0158/0.0313/0.5065

0.0131/0.0349/0.3753

CIPK1

0.0076/0.0308/0.2460

0.0026/0.0130/0.2040

0.0032/0.0134/0.2348

0.0035/0.0083/0.4179

0.0030/0.0117/0.2563

0.0077/0.0344/0.2240

0.0074/0.0247/0.3009

RacA

0.0117/0.0417/0.2811

0.0020/0.0061/0.3270

0.0093/0.0052/1.7812

NA/NA/NA a

0.0067/0.0001/50

0.0143/0.0402/0.3554

0.0096/0.0391/0.2467

RacB

1.49E-05/0.0149/0.001

NA/NA/NA a

NA/NA/NA a

NA/NA/NA a

NA/NA/NA a

1.49E-05/0.0149/0.001

1.49E-05/0.0149/0.001

EXP

0.0018/0.0372/0.0482

0.0017/0.0335/0.0496

0.0034/0.0259/0.1305

NA/NA/NA a

0.0034/0.0259/0.1305

0.0033/0.0064/0.5184

0.0016/0.0408/0.0394

Exp1

0.0156/0.0562/0.2784

0.0038/0.0166/0.2269

0.0032/0.0221/0.1457

0.0101/0.0650/0.1548

0.0085/0.0174/0.4899

0.0120/0.0607/0.1977

NA/NA/NAa

14-3-3L

0.0025/0.0299/0.0820

5.08E-06/0.0051/0.001

0.0039/0.0109/0.3589

0.0019/3.74E-05/50

0.0047/0.0233/0.2012

0.0024/0.0407/0.0590

0.0046/0.0036/1.2832

CAP

0.0144/0.0477/0.3016

0.0029/5.93E-05/48.97

0.0036/0.0063/0.5721

0.0019/3.84E-05/50

0.0059/0.0065/0.9093

0.0129/0.0437/0.2961

0.0143/0.0423/0.3369

CEL

0.0032/0.0270/0.1171

0.0014/0.0058/0.2392

7.80E-06/0.0078/0.001

0.0009/0.0038/0.2293

0.0007/0.0051/0.1342

0.0029/0.0400/0.0724

0.0028/0.0275/0.1030

Sus1

0.0045/0.0318/0.1420

0.0013/0.0054/0.2425

0.0015/0.0070/0.2072

0.0020/0.0039/0.5236

6.31E-06/0.0063/0.001

0.0053/0.0253/0.2079

0.0013/0.0054/0.2425

CelA1

0.0028/0.0406/0.0689

0.0005/0.0097/0.0479

0.0005/0.0027/0.1965

1.06E-05/0.0106/0.001

4.40E-06/0.0044/0.001

0.0038/0.0403/0.0939

0.0027/0.0443/0.0612

CelA3

0.0066/0.0406/0.1615

0.0035/0.0074/0.4772

0.0027/0.0284/0.0967

0.0043/0.0069/0.6208

0.0037/0.0219/0.1683

0.0025/0.0230/0.1067

0.0050/0.0264/0.1904

LTP3

0.0631/0.0752/0.8401

2.37E-05/0.0237/0.001

NA/NA/NA a

1.00E-05/0.0100/0.001

NA/NA/NA a

0.0610/0.0858/0.7111

0.0620/0.0667/0.9289

ACT1

0.0013/0.0445/0.0284

0.0012/0.0088/0.1381

4.43E-05/0.0443/0.001

0.0012/0.0088/0.1381

4.08E-05/0.0408/0.001

6.53E-05/0.0653/0.001

5.37E-05/0.0537/0.001

  1. Letter designations are the same as in Table 2.
  2. a no synonymous and nonsynonymous site.
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BMC Plant Biology

ISSN: 1471-2229

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