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Table 4 Synonymous and nonsynonymous substitution rates in various comparisons among different cotton species

From: Structure, expression differentiation and evolution of duplicated fiber developmental genes in Gossypium barbadense and G. hirsutum

Gene Ka/Ks/Ka:Ks ratio
  A1 VS D5 A1 VS Ath D5 VS Dth A1 VS Atb D5 VS Dtb Ath VS Dth Atb VS Dtb
BG 0.0081/0.0360/0.2243 9.75E-05/0.0098/0.001 0.0025/0.0362/0.0694 1.24E-05/0.0124/0.001 0.0029/0.0135/0.2127 0.0048/0.0282/0.1694 0.0076/0.0403/0.1875
Pel 0.0021/0.0910/0.0228 0.0024/0.0204/0.1198 0.0021/0.0041/0.5064 0.0012/0.0111/0.1106 0.0021/0.0041/0.5064 0.0022/0.0542/0.0398 0.0032/0.0912/0.0348
ManA2 0.0061/0.0218/0.2798 0.0041/0.0137/0.2960 0.0031/0.0085/0.3613 0.0040/0.0164/0.2419 0.0034/0.0076/0.4475 0.0049/0.0177/0.2769 0.0077/0.0183/0.4179
POD2 0.0119/0.0218/0.5457 0.0075/0.0069/1.0812 0.0113/0.0164/0.6852 0.0086/0.0195/0.4392 0.0131/0.0192/0.6829 0.0158/0.0313/0.5065 0.0131/0.0349/0.3753
CIPK1 0.0076/0.0308/0.2460 0.0026/0.0130/0.2040 0.0032/0.0134/0.2348 0.0035/0.0083/0.4179 0.0030/0.0117/0.2563 0.0077/0.0344/0.2240 0.0074/0.0247/0.3009
RacA 0.0117/0.0417/0.2811 0.0020/0.0061/0.3270 0.0093/0.0052/1.7812 NA/NA/NA a 0.0067/0.0001/50 0.0143/0.0402/0.3554 0.0096/0.0391/0.2467
RacB 1.49E-05/0.0149/0.001 NA/NA/NA a NA/NA/NA a NA/NA/NA a NA/NA/NA a 1.49E-05/0.0149/0.001 1.49E-05/0.0149/0.001
EXP 0.0018/0.0372/0.0482 0.0017/0.0335/0.0496 0.0034/0.0259/0.1305 NA/NA/NA a 0.0034/0.0259/0.1305 0.0033/0.0064/0.5184 0.0016/0.0408/0.0394
Exp1 0.0156/0.0562/0.2784 0.0038/0.0166/0.2269 0.0032/0.0221/0.1457 0.0101/0.0650/0.1548 0.0085/0.0174/0.4899 0.0120/0.0607/0.1977 NA/NA/NAa
14-3-3L 0.0025/0.0299/0.0820 5.08E-06/0.0051/0.001 0.0039/0.0109/0.3589 0.0019/3.74E-05/50 0.0047/0.0233/0.2012 0.0024/0.0407/0.0590 0.0046/0.0036/1.2832
CAP 0.0144/0.0477/0.3016 0.0029/5.93E-05/48.97 0.0036/0.0063/0.5721 0.0019/3.84E-05/50 0.0059/0.0065/0.9093 0.0129/0.0437/0.2961 0.0143/0.0423/0.3369
CEL 0.0032/0.0270/0.1171 0.0014/0.0058/0.2392 7.80E-06/0.0078/0.001 0.0009/0.0038/0.2293 0.0007/0.0051/0.1342 0.0029/0.0400/0.0724 0.0028/0.0275/0.1030
Sus1 0.0045/0.0318/0.1420 0.0013/0.0054/0.2425 0.0015/0.0070/0.2072 0.0020/0.0039/0.5236 6.31E-06/0.0063/0.001 0.0053/0.0253/0.2079 0.0013/0.0054/0.2425
CelA1 0.0028/0.0406/0.0689 0.0005/0.0097/0.0479 0.0005/0.0027/0.1965 1.06E-05/0.0106/0.001 4.40E-06/0.0044/0.001 0.0038/0.0403/0.0939 0.0027/0.0443/0.0612
CelA3 0.0066/0.0406/0.1615 0.0035/0.0074/0.4772 0.0027/0.0284/0.0967 0.0043/0.0069/0.6208 0.0037/0.0219/0.1683 0.0025/0.0230/0.1067 0.0050/0.0264/0.1904
LTP3 0.0631/0.0752/0.8401 2.37E-05/0.0237/0.001 NA/NA/NA a 1.00E-05/0.0100/0.001 NA/NA/NA a 0.0610/0.0858/0.7111 0.0620/0.0667/0.9289
ACT1 0.0013/0.0445/0.0284 0.0012/0.0088/0.1381 4.43E-05/0.0443/0.001 0.0012/0.0088/0.1381 4.08E-05/0.0408/0.001 6.53E-05/0.0653/0.001 5.37E-05/0.0537/0.001
  1. Letter designations are the same as in Table 2.
  2. a no synonymous and nonsynonymous site.
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