Skip to main content

Table 1 Number of synonymous and non-synonymous substitutions in the alignments of the coding region of LEAFY and cGAPDH and parameter estimates for the null hypothesis (H0) of the selection analyses (one ω for all alleles) employed to codeml within PAML.

From: To be or not to be the odd one out - Allele-specific transcription in pentaploid dogroses (Rosa L. sect. Caninae(DC.) Ser)

Gene LEAFY cGAPDH
Length of coding region* 1119 789
No. of synonymous substitutions 21 4
No. of non-synonymous substitutions 8 1
Indels 2 -
Parameter estimate for H0 (one ω for all alleles) dS = 0.1126, dN = 0.0190, ω = 0.1688
lnL = -1715.88, k = 1.472
dS = 0.0277, dN = 0.0074
ω = 0.2666
lnL = -1023.59, k = 1.559
  1. *Sequences of coding region are not complete, approximately 50 bp are missing in LEAFY and approximately 120 bp are missing in cGAPDH at both ends to start and stop codon, respectively.