Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar

BMC Plant Biology

Table 1 TLP gene content in sequenced plant species

organism	code	common organism name	phylum	class	order	TLP blast result^a	complete TLP domain^c	small-TLP/TLP-K^d
Chlamydomonas reinhardtii	Chlre	Green algae	Chlorophyte	Chlorophyceae	Volvocales	1	0	0/0
Physcomitrella patens	Phypa	Moss	Bryophyte	Bryopsides	Funariales	5	3	0/0
Selaginella moelledorffii	Selmo	Lycophyte	Tracheophyte	Sellaginellopsides	Selaginellales	18	12	0/0
Oryza sativa	Orysa	Rice	Angiosperm	Monocotyledon	Cyperales	37	26	4/1
Brachypodium distachyon	Bradi	Purple false brome	Angiosperm	Monocotyledon	Poales	32	24	3/2
Sorghum bicolor	Sorbi	Sorghum	Angiosperm	Monocotyledon	Poales	45	36	9/1(1^e)
Zea mays	Zeama	Maize	Angiosperm	Monocotyledon	Poales	38	29	2/2
Mimulus guttatus	Mimgu	Common monkey-flower	Angiosperm	Dicotyledon	Lamiales	33	23	0/0
Vitis vinifera	Vitvi	Grapevine	Angiosperm	Dicotyledon	Rosales	27	18	0/0
Carica papaya	Carpa	Papaya tree	Angiosperm	Dicotyledon	Brassicales	18	16	0/0
Arabidopsis thaliana	Arath	Thale cress	Angiosperm	Dicotyledon	Brassicales	30	22	0/3
Cucumis sativus	Cucsa	Cucumber	Angiosperm	Dicotyledon	Cucurbitales	29	28	0/0
Glycine max	Glyma	Soya	Angiosperm	Dicotyledon	Fabales	58	38	0/0
Medicago truncatula	Medtr	Barrel clover	Angiosperm	Dicotyledon	Fabales	21	16	0/0
Prunus persica	Prupe	Peach tree	Angiosperm	Dicotyledon	Rosales	37	28	0/0
Manihot esculenta	Manes	Manioc	Angiosperm	Dicotyledon	Malpighiales	34	27	0/0
Ricin communis	Ricco	Castor oil plant	Angiosperm	Dicotyledon	Malpighiales	24	22	0/0
Populus trichocarpa	Poptr	Poplar	Angiosperm	Dicotyledon	Malpighiales	59^b	42	0/4

^aNumber of putative TLP genes identified by amino acid homology searches of plant genome sequences on the Phytozome portal [29].
^bNumber of putative TLP genes identified from version 1.1 of the Populus trichocarpa 'Nisqually-1' genome on the JGI website [55].
^cTLP sequences with a complete thaumatin domain.
^dProportion of sTLP and TLP-K with a complete thaumatin domain.
^esmall-TLP/kinase domain fusion (sTLP-K).

ISSN: 1471-2229