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Table 1 Predicted intracellular locations and transmembrane helices of moss hexokinases

From: Two novel types of hexokinases in the moss Physcomitrella patens

Protein Type cTPa mTPa SPa othera Loca RCa TPlena TMHb TMhelixb
PpHxk1 A 0.800 0.207 0.007 0.046 C 3 37 0 -
PpHxk2 B 0.040 0.129 0.724 0.013 S 3 22 1 aa 7-26
PpHxk3 B 0.043 0.091 0.777 0.016 S 2 22 1 aa 7-26
PpHxk4 C 0.337 0.196 0.080 0.452 - 5 - 0 -
PpHxk5 A 0.120 0.373 0.008 0.129 M 4 14 0 -
PpHxk6 A 0.685 0.110 0.010 0.043 C 3 44 0 -
PpHxk7 B 0.164 0.043 0.540 0.032 S 4 22 1 aa 7-26
PpHxk8 B 0.082 0.062 0.771 0.022 S 2 22 1 aa 7-26
PpHxk9 D 0.052 0.067 0.350 0.182 S 5 32 1 aa 7-29
PpHxk10 D 0.048 0.031 0.527 0.298 S 4 28 1 aa 7-29
PpHxk11 D 0.010 0.064 0.877 0.108 S 2 20 1 aa 5-24
  1. a Intracellular locations and target peptides predicted by TargetP 1.1 [44]. Abbreviations: cTP, chloroplast transit peptide; mTP, mitochondrial targeting peptide; SP, secretory pathway signal peptide; other, any other location; Loc, predicted subcellular localization (C, chloroplasts; S, secretory pathway; M, mitochondria); RC, Reliability Class (1 is the most reliable prediction and 5 the weakest); TPlen, predicted target peptide length. For each protein, the predicted location with the highest score is shown in bold style.
  2. b Transmembrane helices predicted by TMHMM 2.0 [43]. Abbreviations: TMH, predicted number of N-terminal transmembrane helices; TMhelix, amino acids predicted to be part of a transmembrane helix.