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Table 4 OrthoMCL analysis of C. arabica and C. canephora, highlighting prominent and specific families in Coffea spp

From: An EST-based analysis identifies new genes and reveals distinctive gene expression features of Coffea arabica and Coffea canephora

OrthoMCL family ID Coffea arabica Coffea canephora Vitis Vinifera Solanum lycopersicum Glycine max Ricinus communis Oryza sativa Arabidopsis thaliana Manual Annotation*
1 446 189 1402 808 2532 1378 813 847 Serine-threonine kinase
2 152 51 580 212 967 461 478 447 PPR repeat protein
6 84 41 193 123 226 99 101 108 Cytochrome P450
544 21 6 1 - - - - - Cystatin
453 14 4 1 7 3 1 1 1 NBS LRR resistance protein
1231 13 5 - - - - - - Small secreted glycine-rich protein
4031 10 - - - - - - - Glycine-rich protein
1510 7 1 1 - 2 1 1 3 UDP-glucosyltransferase
2703 6 3 - 1 1 - 1 - Cysteine proteinase inhibitor like protein
3289 6 - 1 - 2 - 2 - NBS LRR resistance protein
5056 6 1 - 1 - - - - Alcohol dehydrogenase
2306 5 1 - 2 1 1 2 - Cytochrome P450
2722 5 1 - 1 1 2 1 1 NBS LRR resistance protein
3294 5 - 1 - 3 - 1 1 Poly-A binding protein
3303 5 1 2 1 - - - 1 NADPH-dependent cinnamyl alcohol dehydrogenase
3305 5 2 1 2 - - - - Specific tissue protein 2
4049 5 2 1 1 - - 1 - Sugar transport protein
4070 5 - 1 1 3 - - - Cytochrome P450
7241 5 1 1 - - - 1 - Potato type II serine proteinase inhibitor family
10956 5 - - - - - - - Hypothetical protein
7610 4 1 - 1 - - - 1 Ubiquitin-conjugating enzyme
7611 4 1 - 1 1 - - - P-glycoprotein ABC
7613 4 - - 2 1 - - - Hexose transporter
9014 4 1 - - - 1 - - GH3 family protein/Indole-3-acetic acid-amido synthetase
10273 4 1 - - - - - - Potato type II serine proteinase inhibitor family
11588 4 - - - - - - - Small secreted glycine-rich protein
11617 4 - - - - - - - Hypothetical protein
12384 4 - - - - - - - Hypothetical protein
12385 4 - - - - - - - Defensin/gamma thionin
12386 4 - - - - - - - Hypothetical protein
7324 3 2 - - 2 - - - Helix-loop-helix DNA-binding protein
9019 3 - - 1 - 1 - - Zinc/iron transporter
9830 3 - 3 - - - - - Eukaryotic initiation factor (eIF1)/SU1
10271 3 1 - - - - 1 - Metallothionein
10276 3 - - - - 1 - 1 SEC14 cytosolic factor family protein
10293 3 - - 1 1 - - - ABC transporter
10300 3 1 - - 1 - - - Phytochrome B/histidine kinase
10309 3 1 - 1 - - - - Oxidoreductase
11058 3 - 1 1 - - - - ATP-binding cassette transporter
11594 3 - - - - - - 1 A. thaliana-related cystatin
11600 3 - - - - - 1 - Alcohol dehydrogenase
11607 3 1 - - - - - - CAAX amino-terminal protease
11626 3 1 - - - - - - Hypothetical protein
13353 3 - - - - - - - Hypothetical protein
13392 3 - - - - - - - GDP-D-mannose 4,6-dehydratase
14410 3 - - - - - - - No hits found
14413 3 - - - - - - - No hits found
14414 3 - - - - - - - Aspartate aminotransferase superfamily protein
14418 3 - - - - - - - HAT transposase element
14420 3 - - - - - - - Protein translation factor SUI1
8498 2 5 - - - - -   Rapid Alkalinization Factor (RALF)-like protein
9023 2 3 - - - 1 - - GTP binding protein
10281 2 3 - - - - - - No hits found
12371 2 2 - - - - -   Hydroxyproline-rich glycoprotein/extension
12375 2 2 -   - - - - No hits found
1715 - 4 1 2 1 8 - - Viroid polyprotein ORF4 protein
6375 - 4 2 1 1 - - - NBS LRR resistance protein
9679 - 3 1 - 1 1 - - Replication factor A 1
10952 - 3 1 - - 1 - - LTR retrotransposon
11055 - 5 - - - - - - Small glycine-rich protein
14392 - 3 - - - - - - Kelch repeat-containing phosphatase
14397 - 3 - - - - - - Albumin/sulfur-rich seed storage protein
14809 - 3 - - - - - - Hypothetical protein
14813 - 3 - - - - - - Miraculin-like protein
14814 - 3 - - - - - - Invertase inhibitor
  1. * Annotation based on BLASTX-NR (E-value 1e-5).