Table 2 Number of bacterial artificial chromosome (BAC) end sequences (BESs) containing repetitive DNA
From: An overview of the Phalaenopsisorchid genome through BAC end sequence analysis
Class, subclass, group | No. of BESs | % of BESs with repetitive DNA |
|---|---|---|
Class I retrotransposons | 963 | 75.7 |
   Ty1-copia | 163 | 12.8 |
   Ty3-gypsy | 533 | 41.9 |
   LINE | 95 | 7.5 |
   SINE | 0 | 0.0 |
   Unclassified retrotransposons | 172 | 13.5 |
Class II DNA transposons | 137 | 10.8 |
   Ac/Ds | 12 | 0.9 |
   CACTA, En/Spm | 67 | 5.3 |
   Mutator (MULE) | 15 | 1.2 |
   Tourist/Harbinger/Helitron/Mariner | 10 | 0.8 |
   Unclassified Transposons | 33 | 2.6 |
Miniature inverted-repeat transposable elements | 2 | 0.2 |
Centromere | 19 | 1.5 |
rRNA | 33 | 2.6 |
Unclassified | 118 | 9.3 |
Total | 1272 | 100 |