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Table 2 CArG-box sequences found in regions for which IPed DNAs were mapped.

From: Identification of potential target genes for the tomato fruit-ripening regulator RIN by chromatin immunoprecipitation

CArG-box site CArG-box and its flanking sequences (5' to 3')1) Motif (strand)2) CArG-box position (bps)3)
009F CCTAAATA- CTATTATAAG -AATGATCA Possible (+, -) scaffold01172 (3,039,503 - 3,039,512)
016 GTACAGCA- CCAAAATTGG -CGACCACA SRF-like (+, -) scaffold01172 (4,647,499 - 4,647,508)
027R AACTCTCC- CCTATATTGG -TGCTCAAT SRF-like (+, -) scaffold00008 (1,340,392 - 1,340,401)
042F GATAGATC- CTAATTTTGG -TAAGTGAC Possible (+), Intermediate (-) scaffold00077 (3,770,305 - 3,770,314)
046F_1 CTTTTGGG- CTTAATTTAG -GGATTTAC Possible (+, -) scaffold00162 (1,604,081 - 1,604,090)
046F_2 ACATTTTT- CCATATTTAG -TACTAGAT Intermediate (+), Possible (-) scaffold00162 (1,604,514 - 1,604,523)
066F ACTAGCAA- CTATTATAGG -GCCCTCCT Possible (+), Intermediate (-) scaffold00041 (5,908,092 - 5,908,101)
073F AAAGTCCC- CTTTTTTTGG -AAAAATAC Possible (+, -) scaffold00885 (1,175,686 - 1,175,695)
090R TATATTGT- CTATTATAGG -GGACGGTC Possible (+), Intermediate (-) scaffold00235 (679,848 - 679,857)
100_1 GCTGGATT- CTATTATAAG -GACATCAT Possible (+, -) scaffold00073 (9,132 - 9,141)
100_2 GCCAGATT- CCTATATTAG -CAGTATAG Intermediate (+), Possible (-) scaffold00073 (8,936 - 8,945)
128R CTTCATAC- CTTAATTAAG -CAACCTTA Possible (+, -) scaffold00183 (1,735,586 - 1,735,595)
133R AGAAAATG- CCATTTTTGG -AAGGAAGA SRF-like (+, -) scaffold00103 (1,409,234 - 1,409,243)
  1. 1) CArG-box sequences are underlined. Sequences displayed are the same strand as the WGS data (version 1.03) released by SGN. They were used for in vitro gel retardation assay.
  2. 2) Symbols + and - in parentheses indicate that the CArG-box sequences in the exhibited (+) or complementary (-) strands could be grouped into the motifs. Groups of the motif sequences are referenced in the text.
  3. 3) Positions on the WGS are displayed.