Position, structure and expression pattern of predicted genes on flanking genomic regions of CArG boxes. (A) Sequence positions of regions in the scaffolds from the WGS of tomato are indicated above the ends of the horizontal lines. Positions of the CArG boxes in the scaffolds are described in Table 1. All of the mapped ESTs were encoded on the complementary strand (in the right to left orientation). The exons mapped outside of the regions (broken lines) are shown in gray but are not to scale. Note that TSS for a gene corresponding to SGN-U579887 could not be predicted. The ruler below each diagram indicates the distance from the CArG boxes. (B) Expression analyses of the mapped ESTs. Lanes G, P and R represent the mature green, pink coloring and red ripe stages of tomato fruits, respectively. Data are the means from two independent experiments.