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Table 3 Three cis-elements abundant in genes up-regulated and down-regulated in the rhizome tips (RT) of O. longistaminata

From: Identification of rhizome-specific genes by genome-wide differential expression Analysis in Oryza longistaminata

Gene set RT Up-regulated RT Down-regulated
No. of tested genes 64 62
  Total (%) 73.4 ± 11.6 91.9 ± 7.1*
CGACG element (CGACG) Single copy (%) 31.2 37.1
  Two or more copies (%) 42.2 54.8
  Total (%) 82.8 ± 9.9* 58.1 ± 12.8
RY repeat (CATGCA) Single copy (%) 50.0 42.0
  Two or more copies (%) 32.8 16.1
  Total (%) 96.9 ± 4.5* 79 ± 10.6
TAAAG motif (TAAAG) Single copy (%) 59.4 43.5
  Two or more copies (%) 37.5 35.5
  1. *The range about the average indicates 95% confidence limits for p.