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Table 1 The list of genes specifically enriched in the rhizome tips relative to other tissues

From: Identification of rhizome-specific genes by genome-wide differential expression Analysis in Oryza longistaminata

Probe Name OsGI Function Annotation q-value % RT/ST RT/RI RT/SI RT/YL
Os.34982.1.A1_at Os04g17660 Rhodanese-like domain containing protein 0.003 2.60 23.33 7.82 167.88
Os.8120.1.S1_at Os04g33570 CEN-like protein 2 <0.001 1.77 14.03 8.51 42.22
Os.49726.1.S1_at Os11g05470 CEN-like protein 3 0.029 2.24 5.13 6.04 66.16
Os.8203.1.S1_at Os10g05750 proline-rich protein <0.001 1.77 12.97 19.60 105.02
Os.21805.1.S1_s_at Os06g51320 Gibberellin regulated protein, expressed 0.046 3.62 4.94 7.33 8.44
Os.2367.1.S1_at Os03g21820 Alpha-expansin 10 precursor <0.001 3.19 12.74 7.64 28.19
OsAffx.15319.1.S1_at Os06g08830 UDP-glucoronosyl and UDP-glucosyl transferase 0.975 1.60 1.85 2.03 1.65
Os.50483.1.S1_at Os04g42860 GDSL-like Lipase/Acylhydrolase family protein 0.003 2.19 2.84 26.46 60.78
Os.8666.1.S1_at Os02g57110 GDSL-like Lipase/Acylhydrolase family protein <0.001 1.72 14.10 11.25 14.40
OsAffx.15187.1.S1_at Os05g50960 Polygalacturonase family protein 0.003 1.61 2.60 1.85 73.35
Os.17076.1.S1_at Os09g10340 Cytochrome P450 family protein <0.001 3.63 14.96 6.62 19.18
Os.49861.1.S1_at Os04g04330 Leucine Rich Repeat family protein 0.003 3.07 3.12 2.21 9.92
Os.15219.1.S1_at Os06g11320 peptidyl-prolyl cis-trans isomerase <0.001 4.23 13.23 16.75 27.63
Os.15454.2.S1_at Os06g06760 U-box domain containing protein 0.003 4.04 14.32 9.09 44.53
Os.15789.1.S1_at Os12g08920 Peroxidase 43 precursor 0.019 3.66 6.61 16.15 18.90
Os.53726.1.S1_at Os07g05370 protein kinase family protein 0.013 2.14 6.81 3.04 57.21
Os.5682.1.S1_at Os09g30320 BURP domain containing protein 0.006 2.08 2.37 2.48 2.85
Os.8655.1.S1_at Os06g31960 Plant thionin family protein <0.001 1.72 16.42 8.35 53.07
OsAffx.17468.1.S1_s_at Os08g42080 ACT domain containing protein <0.001 1.60 7.34 7.73 4.92
Os.33336.1.S1_at Os01g11350 bZIP transcription factor family protein 0.003 2.97 16.06 4.16 30.68
OsAffx.2611.1.S1_at Os02g14910 bZIP transcription factor family protein <0.001 1.53 7.98 7.43 14.36
Os.28450.1.S1_at Os01g70730 flowering promoting factor-like 1 0.003 4.81 3.12 7.95 5.34
Os.6271.1.S1_at Os07g39320 Homeobox domain containing protein 0.069 1.95 2.51 2.54 4.83
Os.9086.1.S1_at Os03g10210 Homeobox domain containing protein 0.003 2.21 1.63 3.59 19.50
Os.10050.1.S1_at Os01g62660 Myb-like DNA-binding domain 0.003 14.12 15.62 15.82 271.93
Os.12994.1.S1_at Os12g38400 Myb-like DNA-binding domain containing protein <0.001 25.60 9.56 41.36 82.54
Os.47323.1.S1_at Os02g45570 transcription activator 0.270 3.09 2.40 2.88 10.09
Os.49711.1.S1_at Os08g35110 auxin-responsive protein <0.001 2.27 11.19 12.76 18.16
Os.13012.1.S1_at Os03g49880 TCP family transcription factor containing protein <0.001 8.88 9.27 22.59 45.56
Os.151.1.S1_x_at Os03g51690 Homeobox protein OSH1 <0.001 5.12 13.95 15.18 22.66
Os.54612.1.A1_at Os02g07310 Piwi domain containing protein 0.644 2.09 3.48 2.53 4.67
Os.33534.1.S1_s_at Os07g06620 YABBY protein 0.046 2.97 3.04 11.15 101.27
Os.4174.1.S1_at Os08g02070 Agamous-like MADS box protein AGL12 0.003 2.42 20.57 6.84 8.35
Os.11344.1.S1_s_at Os05g48040 MATE efflux family protein <0.001 10.12 13.69 12.84 45.27
Os.28462.1.S1_s_at Os12g02290 Nonspecific lipid-transfer protein 5 precursor <0.001 3.08 21.75 17.68 60.66
Os.54305.1.S1_at Os06g12610 Auxin efflux carrier component 1 <0.001 2.11 6.12 4.90 14.89
Os.14955.1.S1_at Os03g31730 expressed protein 0.003 8.31 17.88 12.88 57.28
Os.15725.1.S1_at Os03g64050 expressed protein 0.029 3.71 3.83 5.88 3.67
Os.22569.1.S1_at Os03g30740 expressed protein 0.003 3.89 3.40 4.57 8.44
Os.27641.1.A1_at Os04g23140 expressed protein 0.006 3.18 3.76 4.31 3.35
Os.3496.1.S1_at Os01g12110 expressed protein 0.006 2.87 5.95 3.63 11.49
Os.47356.1.A1_at Os10g31930 expressed protein 0.011 2.27 4.40 4.46 11.80
Os.8682.1.S1_a_at Os10g08780 expressed protein <0.001 1.95 1.68 3.24 6.41
Os.8682.2.S1_x_at Os10g08780 expressed protein 0.013 1.63 2.96 3.23 2.53
OsAffx.11145.1.S1_s_at Os01g21590 expressed protein 0.139 1.82 1.77 1.61 1.83
OsAffx.28068.1.S1_at Os06g42730 expressed protein <0.001 1.52 1.75 2.20 5.51
OsAffx.30149.1.S1_s_at Os09g36160 expressed protein <0.001 1.51 4.94 3.72 14.06
Os.9836.1.S1_at Os11g10590 hypothetical protein 0.003 1.62 4.21 3.15 61.66
Os.28030.2.A1_at Os06g0696400 Xyloglycan endo-transglycosylase precursor 0.003 3.15 6.76 6.45 29.74
Os.57006.1.S1_at Os09g0459200 Conserved hypothetical protein <0.001 1.99 12.54 11.69 56.03
Os.7285.1.S1_at Os05g0518600 SL-TPS/P <0.001 1.91 2.67 6.60 2.21
Os.7317.2.S1_at Os01g0914300 Plant lipid transfer domain containing protein 0.011 1.88 3.24 8.35 8.22
Os.7431.1.S1_a_at Os04g0272700 UDP-glucuronosyl/UDP-glucosyltransferase 0.006 1.87 5.92 3.91 5.73
Os.7567.1.S1_at Os10g0554800 Plant lipid transfer domain containing protein 0.003 1.84 4.24 6.96 13.89
Os.7575.1.S1_at Os04g0619800 Conserved hypothetical protein 0.106 1.90 2.57 1.83 4.64
Os.9167.1.A1_at Os06g0649600 Non-protein coding transcript 0.011 1.62 7.47 3.17 21.16
OsAffx.22476.1.S1_x_at Os07g0160100 YABBY2 <0.001 1.59 2.46 2.69 299.82
OsAffx.27291.1.S1_at Os05g43440 DNA-binding protein <0.001 1.53 1.96 2.23 222.60
  1. Note: RT/ST, RT/RI, RT/SI, and RT/YL indicate ratio of signal1 (RT)/signal2 (ST, RI, SI, and YL) from Wilcoxon Rank-Sum tests, respectively.