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Table 2 Differences in categorization of the unigenes from the full length cDNA library compared to two other recent EST libraries of common bean.

From: Construction and EST sequencing of full-length, drought stress cDNA libraries for common beans (Phaseolus vulgaris L.)

Gene Ontology

Full-length library (this study)

%

Root library (Blair et al., in press)

%

Biological process 2

    

   Biological regulation

524

8.9

204

6.5

   Carbon utilization

13

0.2

3

0.1

   Cell proliferation

0

0.0

4

0.1

   Cellular component organization

225

3.8

119

3.8

   Cellular processes

1669

28.4

920

29.4

   Cellular component biogenesis

98

1.7

80

2.6

   Developmental process

307

5.2

136

4.3

   Death

22

0.4

7

0.2

   Immune system process

48

0.8

11

0.4

   Localization

374

6.4

212

6.8

   Metabolic process

1567

26.7

871

27.8

   Multi-organism process

0

0.0

54

1.7

   Multi-cellular organismal process

251

4.3

115

3.7

   Nitrogen utilization

0

0.0

4

0.1

   Pigmentation

0

0.0

1

0.0

   Rhythmic processes

0

0.0

2

0.1

   Reproduction

141

2.4

72

2.3

   Response to stimulus

638

10.9

310

9.9

   Sulfur utilization

0

0.0

4

0.1

Molecular function 2

    

   Antioxidant activity

34

0.9

28

1.3

   Binding

1656

42.5

841

40.4

   Catalytic activity

1472

37.8

704

33.8

   Electron carrier activity

108

2.8

61

2.9

   Enzyme regulator activity

34

0.9

21

1.0

   Metallochaperone activity

2

0.1

1

0.0

   Molecular transducer activity

53

1.4

15

0.7

   Nutrient reservoir activity

10

0.3

5

0.2

   Protein tag

2

0.1

0

0.0

   Structural molecular activity

101

2.6

193

9.3

   Translation regulator activity

51

1.3

40

1.9

   Transporter activity

227

5.8

113

5.4

   Transcription regulator activity

148

3.8

60

2.9

Cellular component 3

    

   Apoplast

95

1.9

58

2.0

   Cell part

2176

44.6

1200

40.9

   Extracellular region

0

0.0

2

0.1

   Organelle part

404

8.3

364

12.4

   Organelle - membrane bounded

1500

30.7

779

26.5

   Organelle - non membrane bound

181

3.7

265

9.0

   Protein complex

271

5.6

134

4.6

   Protein-DNA complex

17

0.3

23

0.8

   Vesicle

236

4.8

112

3.8

  1. Gene ontology according to biological processes, molecular function and cellular compartmentalization.
  2. 1 refers to number of unigenes in each case for high phosphorus (HP) or low phosphorus (LP) root libraries.
  3. 2 performed at level 2 for greater details of biological process and molecular function.
  4. 3 performed at level 3 for greater details of cellular component placement.