Skip to main content

Table 2 Differences in categorization of the unigenes from the full length cDNA library compared to two other recent EST libraries of common bean.

From: Construction and EST sequencing of full-length, drought stress cDNA libraries for common beans (Phaseolus vulgaris L.)

Gene Ontology Full-length library (this study) % Root library (Blair et al., in press) %
Biological process 2     
   Biological regulation 524 8.9 204 6.5
   Carbon utilization 13 0.2 3 0.1
   Cell proliferation 0 0.0 4 0.1
   Cellular component organization 225 3.8 119 3.8
   Cellular processes 1669 28.4 920 29.4
   Cellular component biogenesis 98 1.7 80 2.6
   Developmental process 307 5.2 136 4.3
   Death 22 0.4 7 0.2
   Immune system process 48 0.8 11 0.4
   Localization 374 6.4 212 6.8
   Metabolic process 1567 26.7 871 27.8
   Multi-organism process 0 0.0 54 1.7
   Multi-cellular organismal process 251 4.3 115 3.7
   Nitrogen utilization 0 0.0 4 0.1
   Pigmentation 0 0.0 1 0.0
   Rhythmic processes 0 0.0 2 0.1
   Reproduction 141 2.4 72 2.3
   Response to stimulus 638 10.9 310 9.9
   Sulfur utilization 0 0.0 4 0.1
Molecular function 2     
   Antioxidant activity 34 0.9 28 1.3
   Binding 1656 42.5 841 40.4
   Catalytic activity 1472 37.8 704 33.8
   Electron carrier activity 108 2.8 61 2.9
   Enzyme regulator activity 34 0.9 21 1.0
   Metallochaperone activity 2 0.1 1 0.0
   Molecular transducer activity 53 1.4 15 0.7
   Nutrient reservoir activity 10 0.3 5 0.2
   Protein tag 2 0.1 0 0.0
   Structural molecular activity 101 2.6 193 9.3
   Translation regulator activity 51 1.3 40 1.9
   Transporter activity 227 5.8 113 5.4
   Transcription regulator activity 148 3.8 60 2.9
Cellular component 3     
   Apoplast 95 1.9 58 2.0
   Cell part 2176 44.6 1200 40.9
   Extracellular region 0 0.0 2 0.1
   Organelle part 404 8.3 364 12.4
   Organelle - membrane bounded 1500 30.7 779 26.5
   Organelle - non membrane bound 181 3.7 265 9.0
   Protein complex 271 5.6 134 4.6
   Protein-DNA complex 17 0.3 23 0.8
   Vesicle 236 4.8 112 3.8
  1. Gene ontology according to biological processes, molecular function and cellular compartmentalization.
  2. 1 refers to number of unigenes in each case for high phosphorus (HP) or low phosphorus (LP) root libraries.
  3. 2 performed at level 2 for greater details of biological process and molecular function.
  4. 3 performed at level 3 for greater details of cellular component placement.
\