Table 1 Details of pigeonpea transcriptome shotgun sequence reads and their assembly into TSA contigs using 454-Newbler assembler
Variety | No. of sequence reads | Sequence length (bp) | Average read length (bp) | Average depth | Total no. of contigs | No. of bases in contigs (bp) |
|---|---|---|---|---|---|---|
Asha | 906,300 | 303,202,320 | 335 | 10.41 | 35,204 | 25,404,562 |
UPAS 120 | 790,424 | 263,411,375 | 333 | 10.10 | 30,147 | 22,824,365 |
Total | 1,696,724 | 566,613,695 | 334 | 10.25 | 65,351 | 48,228,927 |