Table 2 Genes encoding carotenoid biosynthetic enzymes, chlorophyll binding proteins and photosystem proteins
| Â | RPKM | green/white | Â | Top hit | Â | ||
|---|---|---|---|---|---|---|---|
unigene ID | white | green | ratio | p value | ID | description* | e value |
Carotenoid biosynthesis | Â | Â | Â | Â | Â | Â | Â |
PP038070 | 0.3 | 7 | 23.3333 | 0 | AT4G25700.1 | CAROTENE BETA-RING HYDROXYLASE | 8e-093 |
PP043130 | 0.3 | 4.2 | 14 | 0 | AT4G25700.1 | CAROTENE BETA-RING HYDROXYLASE | 6e-036 |
PP013262 | 0.7 | 3.5 | 5 | 5.64E-06 | AT3G21500.2 | 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE | 1e-032 |
PP011276 | 1.1 | 4.3 | 3.90909 | 2.88E-06 | AT5G67030.1 | ZEAXANTHIN EPOXIDASE | 1e-034 |
PP088927 | 5.4 | 18.9 | 3.5 | 0 | AT4G15560.1 | 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE | 1e-054 |
Chlorophyll binding | Â | Â | Â | Â | Â | Â | Â |
PP019996 | 0.2 | 36.9 | 184.5 | 0 | AT1G15820.1 | LHCB6 | 8e-042 |
PP013404 | 1.1 | 100.8 | 91.6364 | 0 | AT2G34430.1 | LHCB1.4 | 4e-042 |
PP042072 | 0.2 | 12.1 | 60.5 | 0 | AT1G29930.1 | LHCB1.5 | 4e-047 |
PP032956 | 2.5 | 140.7 | 56.28 | 0 | AT2G34430.1 | LHCB1.4 | 5e-112 |
PP036244 | 0.5 | 15.5 | 31 | 0 | AT3G54890.1 | LHCA1 | 1e-131 |
PP026927 | 1 | 26.9 | 26.9 | 0 | AT3G27690.1 | LHCB2.3 | 4e-059 |
PP032648 | 0.5 | 12 | 24 | 0 | AT2G34430.1 | LHCB1.4 | 3e-144 |
PP034454 | 1.2 | 25.7 | 21.4167 | 0 | AT3G27690.1 | LHCB2.3 | 3e-096 |
PP014055 | 4.5 | 90.2 | 20.0444 | 0 | AT1G29930.1 | LHCB1.5 | 5e-120 |
PP022096 | 1.8 | 34.9 | 19.3889 | 0 | AT3G54890.1 | LHCA1 | 3e-043 |
PP016518 | 5.2 | 80.2 | 15.4231 | 0 | AT1G61520.1 | LHCA3 | 1e-096 |
PP036291 | 5.6 | 85.6 | 15.2857 | 0 | AT3G61470.1 | LHCA2 | 6e-103 |
PP002791 | 0.7 | 10.4 | 14.8571 | 0 | AT1G15820.1 | LHCB6 | 6e-026 |
PP060891 | 0 | 13.8 | 13.8 | 0 | AT3G54890.1 | LHCA1 | 3e-037 |
PP032891 | 0.7 | 9.4 | 13.4286 | 0 | AT5G01530.1 | LHCB4.1 | 2e-039 |
PP033574 | 1.4 | 18.1 | 12.9286 | 0 | AT3G54890.1 | LHCA1 | 9e-121 |
PP043522 | 2.1 | 25.6 | 12.1905 | 0 | AT1G61520.1 | LHCA3 | 5e-036 |
PP004292 | 6.9 | 83.9 | 12.1594 | 0 | AT3G61470.1 | LHCA2 | 4e-132 |
PP041756 | 1.1 | 13.3 | 12.0909 | 0 | AT2G34430.1 | LHCB1.4 | 6e-023 |
PP004529 | 21.5 | 259.4 | 12.0651 | 0 | AT1G15820.1 | LHCB6 | 1e-128 |
PP003367 | 14.8 | 176.1 | 11.8986 | 0 | AT3G61470.1 | LHCA2 | 7e-125 |
PP019899 | 28.5 | 328.4 | 11.5228 | 0 | AT1G29930.1 | LHCB1.5 | 2e-146 |
PP020291 | 40.5 | 445.8 | 11.0074 | 0 | AT2G34430.1 | LHCB1.4 | 1e-143 |
PP055138 | 0.7 | 7.6 | 10.8571 | 0 | AT3G27690.1 | LHCB2.3 | 9e-048 |
PP005460 | 2.1 | 21.5 | 10.2381 | 0 | AT3G54890.2 | LHCA1 | 9e-066 |
PP020373 | 0 | 9.9 | 9.9 | 0 | AT3G08940.2 | LHCB4.2 | 3e-025 |
PP021872 | 12.4 | 115 | 9.27419 | 0 | AT3G08940.2 | LHCB4.2 | 1e-144 |
PP034445 | 0.9 | 8.3 | 9.22222 | 0 | AT3G27690.1 | LHCB2.3 | 3e-099 |
PP003971 | 13.1 | 117.1 | 8.93893 | 0 | AT3G54890.1 | LHCA1 | 1e-135 |
PP034046 | 1.1 | 9.2 | 8.36364 | 0 | AT5G54270.1 | LHCB3 | 4e-153 |
PP033656 | 4 | 31.3 | 7.825 | 0 | AT5G54270.1 | LHCB3 | 1e-028 |
PP029126 | 6 | 46.1 | 7.68333 | 0 | AT1G61520.1 | LHCA3 | 3e-077 |
PP005284 | 6.7 | 47.7 | 7.1194 | 0 | AT1G29930.1 | LHCB1.5 | 2e-105 |
PP021031 | 36.8 | 258.7 | 7.02989 | 0 | AT2G34430.1 | LHCB1.4 | 1e-061 |
PP016372 | 2.4 | 16.7 | 6.95833 | 0 | AT2G34430.1 | LHCB1.4 | 7e-020 |
PP022981 | 6.9 | 47 | 6.81159 | 0 | AT2G34430.1 | LHCB1.4 | 6e-060 |
PP021682 | 14.1 | 91.5 | 6.48936 | 0 | AT1G61520.1 | LHCA3 | 2e-130 |
PP003968 | 50.6 | 320 | 6.32411 | 0 | AT1G29930.1 | LHCB1.5 | 9e-151 |
PP020586 | 22.7 | 135.7 | 5.97797 | 0 | AT1G61520.1 | LHCA3 | 3e-129 |
PP005425 | 5.4 | 26.2 | 4.85185 | 0 | AT1G29910.1 | LHCB1.5 | 1e-051 |
PP010147 | 48.6 | 226.7 | 4.66461 | 0 | AT1G15820.1 | LHCB6 | 5e-123 |
PP003504 | 66.3 | 305.1 | 4.60181 | 0 | AT3G47470.1 | LHCA4 | 8e-131 |
PP004840 | 40.6 | 181.7 | 4.47537 | 0 | AT2G34430.1 | LHCB1.4 | 4e-115 |
PP020865 | 14.6 | 61.6 | 4.21918 | 0 | AT2G34430.1 | LHCB1.4 | 2e-019 |
PP032222 | 8.6 | 34.2 | 3.97674 | 0 | AT4G10340.1 | LHCB5 | 7e-098 |
PP021166 | 104.1 | 391.8 | 3.76369 | 0 | AT2G34430.1 | LHCB1.4 | 6e-150 |
PP005062 | 24.4 | 90.1 | 3.69262 | 0 | AT4G10340.1 | LHCB5 | 2e-128 |
PP033260 | 4.3 | 15.8 | 3.67442 | 0 | AT3G27690.1 | LHCB2.3 | 3e-140 |
PP032950 | 102.9 | 376.3 | 3.65695 | 0 | AT2G34430.1 | LHCB1.4 | 5e-150 |
PP022979 | 10 | 33 | 3.3 | 0 | AT1G44575.1 | NPQ4 | 6e-068 |
PP001298 | 3.7 | 12 | 3.24324 | 0 | AT5G01530.1 | LHCB4.1 | 3e-031 |
PP021716 | 24.4 | 78.8 | 3.22951 | 0 | AT4G10340.1 | LHCB5 | 1e-133 |
PP003549 | 24.1 | 74.3 | 3.08299 | 0 | AT1G44575.1 | NPQ4 | 1e-107 |
Photosystem proteins | Â | Â | Â | Â | Â | Â | Â |
PP008642 | 0.2 | 25.8 | 129 | 0 | AT3G21055.1 | PSBTN (PHOTOSYSTEM II SUBUNIT T) | 5e-027 |
PP000591 | 0.5 | 54.9 | 109.8 | 0 | AT1G03130.1 | PSAD-2 (PHOTOSYSTEM I SUBUNIT D-2) | 1e-053 |
PP006879 | 0.1 | 4.7 | 47 | 0 | P11594 | OXYGEN-EVOLVING ENHANCER PROTEIN 2 | 2e-012 |
PP004388 | 1.1 | 45.3 | 41.1818 | 0 | AT1G55670.1 | PSAG (PHOTOSYSTEM I SUBUNIT G) | 1e-066 |
PP016988 | 0.2 | 4.9 | 24.5 | 0 | AT2G30570.1 | PSBW (PHOTOSYSTEM II REACTION CENTER W) | 5e-025 |
PP018045 | 7.8 | 174.6 | 22.3846 | 0 | AT1G08380.1 | PSAO (PHOTOSYSTEM I SUBUNIT O) | 8e-070 |
PP036218 | 0.3 | 5 | 16.6667 | 0 | ATCG00280.1 | CP43 SUBUNIT OF THE PHOTOSYSTEM II REACTION CENTER | 2.00E-171 |
PP032734 | 1.1 | 17.4 | 15.8182 | 0 | AT1G08380.1 | PSAO (PHOTOSYSTEM I SUBUNIT O) | 1e-065 |
PP020420 | 14.5 | 221.7 | 15.2897 | 0 | AT1G06680.1 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) | 9e-122 |
PP018042 | 0 | 14.7 | 14.7 | 0 | AT1G52230.1 | PSAH2 (PHOTOSYSTEM I SUBUNIT H2) | 2e-019 |
PP004848 | 3.4 | 49.6 | 14.5882 | 0 | AT1G06680.1 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) | 3e-118 |
PP014192 | 7.3 | 103.1 | 14.1233 | 0 | AT3G21055.1 | PSBTN (PHOTOSYSTEM II SUBUNIT T) | 6e-036 |
PP021663 | 4.9 | 63.5 | 12.9592 | 0 | AT2G06520.1 | PSBX (PHOTOSYSTEM II SUBUNIT X) | 1e-038 |
PP069357 | 0.7 | 8.2 | 11.7143 | 0 | AT3G21055.1 | PSBTN (PHOTOSYSTEM II SUBUNIT T) | 1e-035 |
PP005143 | 6.3 | 68.6 | 10.8889 | 0 | AT4G12800.1 | PSAL (PHOTOSYSTEM I SUBUNIT L) | 5e-096 |
PP016409 | 7.1 | 60.7 | 8.5493 | 0 | AT1G08380.1 | PSAO (PHOTOSYSTEM I SUBUNIT O) | 2e-065 |
PP033894 | 5.6 | 44.7 | 7.98214 | 0 | AT1G03600.1 | PHOTOSYSTEM II FAMILY PROTEIN | 2e-051 |
PP014928 | 10.7 | 84 | 7.85047 | 0 | AT1G30380.1 | PSAK (PHOTOSYSTEM I SUBUNIT K) | 5e-057 |
PP017397 | 10.6 | 76.7 | 7.23585 | 0 | AT2G06520.1 | PSBX (PHOTOSYSTEM II SUBUNIT X) | 2e-018 |
PP060944 | 0 | 7.1 | 7.1 | 0 | AT1G52230.1 | PSAH2 (PHOTOSYSTEM I SUBUNIT H2) | 4e-016 |
PP017005 | 0 | 6.6 | 6.6 | 0 | AT1G79040.1 | PSBR (PHOTOSYSTEM II SUBUNIT R) | 2e-034 |
PP021626 | 0 | 6.5 | 6.5 | 0 | AT1G52230.1 | PSAH2 (PHOTOSYSTEM I SUBUNIT H2) | 1e-035 |
PP000042 | 7.8 | 48.3 | 6.19231 | 0 | AT1G52230.1 | PSAH2 (PHOTOSYSTEM I SUBUNIT H2) | 2e-056 |
PP022192 | 25.2 | 130.2 | 5.16667 | 0 | AT3G50820.1 | PSBO2 (PHOTOSYSTEM II SUBUNIT O-2) | 4e-176 |
PP032949 | 6.7 | 33.7 | 5.02985 | 0 | AT1G79040.1 | PSBR (PHOTOSYSTEM II SUBUNIT R) | 2e-060 |
PP032493 | 5.2 | 25.1 | 4.82692 | 0 | AT1G52230.1 | PSAH2 (PHOTOSYSTEM I SUBUNIT H2) | 2e-056 |
PP033323 | 21.5 | 100.9 | 4.69302 | 0 | AT1G79040.1 | PSBR (PHOTOSYSTEM II SUBUNIT R) | 4e-061 |
PP033241 | 6 | 27.1 | 4.51667 | 0 | AT4G03280.1 | PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C) | 3e-107 |
PP033302 | 7.4 | 32.5 | 4.39189 | 0 | AT1G79040.1 | PSBR (PHOTOSYSTEM II SUBUNIT R) | 3e-064 |
PP005186 | 48.6 | 205.7 | 4.23251 | 0 | AT1G06680.1 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) | 7e-116 |
PP016053 | 22.9 | 96.6 | 4.21834 | 0 | AT2G30570.1 | PSBW (PHOTOSYSTEM II REACTION CENTER W) | 3e-042 |
PP022547 | 5.8 | 23.8 | 4.10345 | 0 | AT2G06520.1 | PSBX (PHOTOSYSTEM II SUBUNIT X) | 3e-018 |
PP012172 | 7.3 | 29.7 | 4.06849 | 0 | AT1G03600.1 | PHOTOSYSTEM II FAMILY PROTEIN | 6e-066 |
PP000003 | 17 | 68.8 | 4.04706 | 0 | AT1G55670.1 | PSAG (PHOTOSYSTEM I SUBUNIT G) | 8e-067 |
PP033216 | 12.2 | 47.9 | 3.92623 | 0 | AT1G79040.1 | PSBR (PHOTOSYSTEM II SUBUNIT R) | 2e-054 |
PP041363 | 2 | 7.7 | 3.85 | 0 | NP_174418 | PSAF (PHOTOSYSTEM I SUBUNIT F) | 4e-009 |
PP012010 | 26.9 | 95.3 | 3.54275 | 0 | AT4G12800.1 | PSAL (PHOTOSYSTEM I SUBUNIT L) | 5e-101 |
PP033278 | 11.6 | 40.2 | 3.46552 | 0 | AT1G79040.1 | PSBR (PHOTOSYSTEM II SUBUNIT R) | 6e-044 |
PP033227 | 10.1 | 33.6 | 3.32673 | 0 | AT1G52220.1 | PSI-P (PHOTOSYSTEM I P SUBUNIT) | 4e-042 |
PP005055 | 24 | 76.9 | 3.20417 | 0 | AT1G30380.1 | PSAK (PHOTOSYSTEM I SUBUNIT K) | 3e-055 |
PP039593 | 2.1 | 6.5 | 3.09524 | 0 | AT1G31330.1 | PSAF (PHOTOSYSTEM I SUBUNIT F) | 9e-036 |
PP013176 | 7 | 21.5 | 3.07143 | 0 | AT2G46820.1 | PSI-P (PHOTOSYSTEM I P SUBUNIT) | 2e-044 |