Table 1 Transcription factor binding sites and motifs.

3-AF1 binding site

x

light responsive element

5UTR Py-rich stretch

x (1)

x (1)

x (2)

cis -acting element conferring high transcription level

ABRE

x

cis-acting element involved in the abscisic acid responsiveness

ACE

x

x

cis-acting element involved in light responsiveness

AE-box

x

part of a module for light response

ARE

x (1)

x (1)

x (1)

cis -acting regulatory element essential for anaerobic induction

as-2-box

x (1)

x (1)

involved in shoot-specific expression and light responsiveness

AT- rich element

x

binding site of AT-rich DNA binding protein (ATBP-1)

AT1-motif

x

part of a light responsive module

ATCT-motif

x

part of a conserved DNA module involved in light responsiveness

Box 4

x

x

x

x

part of a conserved DNA module involved in light responsiveness

Box I

x

x

x

x

light responsive element

Box II

x

part of a light responsive element

Box III

x

protein binding site

Box W1

x

x

fungal elicitor responsive element

CAAT-box

x

x

x

x

common cis-element in promoter and enhancer regions

CAT-box

x

x

cis-acting regulatory element related to meristem expression

CATT-motif

x

x

part of a light responsive element

CCAAT-box

x

x

MYBHV1 binding site

CGTCA-motif

x

x

cis-acting regulatory element involved in MeJA-responsiveness

chs-CMA2a

x

part of a light responsive element

circadian

x

x

x

cis-acting regulatory element involved in circadian control

ERE

x

ethylene-responsive element

GAG-motif

x

x

part of a light responsive element

GA-motif

x

x

x

part of a light responsive element

GARE-motif

x

x

gibberillin-responsive element

G-Box

x

x

cis-acting regulatory element involved in light responsiveness

G-box

x

x

cis-acting regulatory element involved in light responsiveness

GT1-motif

x

light responsive element

HSE

x

cis-element involved in heat stress responsiveness

LAMP-element

x

part of a light responsive element

LS7

x

part of a light responsive element

MBS

x (2)

x (2)

x (1)

x (1)

MYB binding site involved in drought-inducibility

MBSI

x

MYB binding site involved in flavonoid biosynthetic genes regulation

MBSII

x

MYB binding site involved in flavonoid biosynthetic genes regulation

motif 1

x

cis-acting regulatory element root specific

MRE

x

x

MYB binding site involved in light responsiveness

P-box

x

gibberillin-responsive element

sdOCT

x

cis-acting regulatory element related to meristem specific activation

Skn-1 motif

x

x

x

x

cis-acting regulatory element required for endosperm expression

Sp1

x

x

x

light responsive element

TATA-box

x

x

x

x

core promoter element around -30 of transcription start

TCA- element

x (1)

x (2)

x (2)

cis -acting element involved in salicylic acid responsiveness

TC-rich repeats

x (2)

x (3)

x (2)

x (2)

cis -acting responsive element involved in defense and stress responsiveness

TCT-motif

x

x

x

part of a light responsive element

TGACG-motif

x

x

cis-acting regulatory element involved in MeJA-responsiveness

TGA-element

x

x

auxin-responsive element

Total

23

27

21

25