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Table 6 Differentially expressed genes (P < 0.05, ≥1.75-fold) in Chardonnay grapevine berries between 10-days after theoretical harvest (TH+10) and theoretical harvest date (TH) of the 2005 and 2006 growing seasons.

From: Transcriptional analysis of late ripening stages of grapevine berry

Putative function Grape Microarray Accession Number (Vv_#) Grape Nucleotide Accession Number (mRNA) Grape Gene Accession Number (GSVIVT#) Most Homologous ArabidopsisSequence WBB average ratio p-value DSB average ratio p-value
Aroma related genes         
Valencene synthase (VvValCS) Vv_10004183 FJ696653/AY561843 GSVIVT01036322001 At5g23960 2.031 2.00E-05 1.823 2.00E-05
Pathogenesis-related genes         
Pathogenesis-related protein 1 (PR-1) Vv_10011243 AJ536326 GSVIVT01037015001 At2g14580 2.049 3.00E-05 1.558 0.00024
Pathogenesis-related protein 1 (PR-1) Vv_10004981 XM_002274239 GSVIVT01037014001 At2g14610 2.059 0.00016 1.637 0.00029
Beta-1,3-glucanase (PR-2) Vv_10010418 AF239617 GSVIVT01035013001 At4g16260 1.566 0.00014 0.994 0.00133
Thaumatin-like protein (PR-5) Vv_10000872 XM_002282994 GSVIVT01019840001 At4g11650 1.337 0.00018 1.273 0.00019
Leucine-rich repeat protein Vv_10000077 XM_002263817 GSVIVT01032059001 At3g20820 -1.26 0.00015 -1.668 0.0012
Stress-related genes         
Heat shock protein Vv_10011030 XM_002281184 GSVIVT01016426001 At5g59720 -1.157 0.00016 -1.399 0.00027
Heat shock protein Vv_10000006 XM_002281358 GSVIVT01016429001 At3g46230 -0.951 0.00788 -1.133 0.00038
Heat shock protein Vv_10011029 XM_002281318 GSVIVT01016428001 At3g46230 -1.136 7.00E-04 -1.351 0.00013
Growth and development-related genes         
TFL1C protein Vv_10003390 XM_002278819 GSVIVT01010598001 At5g62040 0.929 0.00023 1.208 0.00025
Rapid ALkalinization Factor-like protein Vv_10004862 XM_002282632 GSVIVT01022118001 - -0.962 0.00191 -1.067 0.00235
Cell wall-modifying enzymes         
Polygalacturonase-like protein Vv_10013430 XM_002278894 GSVIVT01019405001 At4g23500 1.376 0.00066 1.335 0.00031
Pectate lyase (VvPL1) Vv_10010773 AY043234 GSVIVT01029048001 At1g04680 -1.014 0.00031 -1.677 0.00043
Hormone metabolism and regulation         
Auxin-responsive protein Vv_10002615 XM_002284085 GSVIVT01018099001 At5g43700 1.08 0.00032 0.946 0.00047
Auxin-responsive protein Vv_10009542 XM_002279919 GSVIVT01021779001 At1g04240 1.736 7.00E-05 1.415 0.00045
Gibberellin 2-oxidase Vv_10009047 XM_002268137 GSVIVT01012628001 At4g21200 -1.197 0.00069 -1.046 0.00037
Transporters and trafficking         
Aquaporin (TIP1;2) Vv_10003817 DQ834702 GSVIVT01033677001 At2g36830 -0.802 0.00097 -1.286 0.00022
Vacuolar pyrophosphatase         
(vpp2) Vv_10000514 AJ557256 GSVIVT01012841001 At1g15690 -0.997 0.00018 -0.911 0.00048
Miscellaneous         
Homeobox leucine zipper protein Vv_10004955 XM_002262914 GSVIVT01027407001 At3g61890 -1.065 0.00029 -1.076 3.00E-04
Heavy-metal-associated domain-containing protein Vv_10002809 XM_002277832 GSVIVT01025598001 At5g02600 -0.975 0.00029 -0.95 0.00046
GDSL-motif lipase/hydrolase family protein Vv_10000511 XM_002271815 GSVIVT01030528001 At4g26790 -0.82 0.00068 -0.853 0.00087
Amino acid transporter Vv_10014047 XM_002283432 GSVIVT01011401001 At3g28960 -1.053 0.00122 -1.186 0.00031
Copper ion binding oxidoreductase Vv_10001170 XM_002275642 GSVIVT01037479001 At5g21105 -0.849 0.00036 -0.866 0.00052
Peptidase/subtilase Vv_10008612 XM_002278256 GSVIVT01015069001 At2g05920 -1.134 0.00068 -1.101 0.00131
  1. Genes are organized in functional categories. Ratio values are presented as log2. DSB, densimetrically sorted berries; TH, theoretical harvest; TH+10, 10-days after harvest; WBB, whole bunch berries.