Table 5 Differentially expressed genes (P < 0.05, ≥1.75-fold) in Chardonnay grapevine berries between theoretical harvest date (TH) and one week before (TH-7) of the 2005 and 2006 growing seasons.
From: Transcriptional analysis of late ripening stages of grapevine berry
Putative function | Grape Microarray Accession Number (Vv_#) | Grape Nucleotide Accession Number (mRNA) | Grape Gene Accession Number (GSVIVT#) | Most Homologous Arabidopsis Sequence | WBB average ratio | p-value | DSB average ratio | p-value |
|---|---|---|---|---|---|---|---|---|
Cell wall related genes | Â | Â | Â | Â | Â | Â | Â | Â |
Alpha-expansin | Vv_10001623 | XM_002284822 | GSVIVT01007987001 | At1g69530 | -1.14 | 0.00032 | -0.829 | 0.00246 |
Polygalacturonate 4-alpha-galacturonosyltransferase | Vv_10003714 | XM_002271124 | GSVIVT01020141001 | At1g70090 | -1.501 | 0.00027 | -1.585 | 0.00022 |
Xyloglucan endotransglycosylase/hydrolase | Vv_10011203 | XM_002274118 | GSVIVT01029170001 | At5g57550 | -0.884 | 0.00045 | -0.799 | 0.00062 |
Xyloglucan endotransglycosylase/hydrolase | Vv_10011021 | XM_002274791 | GSVIVT01029162001 | At5g57560 | -1.223 | 0.00014 | -1.2 | 0.00018 |
Xyloglucan endotransglycosylase/hydrolase | Vv_10010901 | XM_002262725 | GSVIVT01031601001 | At3g23730 | -1.1 | 0.00033 | -1.36 | 0.00014 |
Xyloglucan endotransglucosylase/hydrolase | Vv_10011290 | XM_002274516 | GSVIVT01029166001 | At4g25810 | -1.472 | 6.00E-05 | -1.475 | 7.00E-05 |
Biotic and abiotic stress related proteins | Â | Â | Â | Â | Â | Â | Â | Â |
Pathogenesis-related protein 10 | Vv_10003874 | XM_002274749 | GSVIVT01035055001 | - | 1.542 | 0.00156 | 1.086 | 0.00016 |
Miraculin-like protein | Vv_10011266 | XM_002266394 | GSVIVT01012922001 | At1g17860 | -2.409 | 9.00E-05 | -0.994 | 0.00104 |
Transporters | Â | Â | Â | Â | Â | Â | Â | Â |
Sulfate transporter | Vv_10001315 | XM_002279177 | GSVIVT01018028001 | At3g51895 | -1.207 | 0.00084 | -0.907 | 0.00169 |
Transcription factors | Â | Â | Â | Â | Â | Â | Â | Â |
TCP transcription factor | Vv_10010249 | XM_002272192 | GSVIVT01012766001 | At1g72010 | -1.233 | 0.00021 | -1.038 | 0.00014 |
bZIP transcription factor | Vv_10007432 | XM_002285275 | GSVIVT01014246001 | At3g58120 | -1.499 | 7.00E-05 | -1.535 | 5.00E-05 |
Miscellaneous | Â | Â | Â | Â | Â | Â | Â | Â |
Phosphate-induced protein | Vv_10000589 | XM_002285726 | GSVIVT01009065001 | At4g08950 | -2.342 | 0.00021 | -1.885 | 2.00E-04 |
Phosphate-induced protein | Vv_10000871 | XM_002282859 | GSVIVT01023873001 | At2g17230 | -1.141 | 0.00157 | -1.184 | 0.00098 |
beta-ketoacyl-CoA synthase | Vv_10004485 | XM_002284950 | GSVIVT01015472001 | At2g26640 | -0.845 | 0.00211 | -0.883 | 0.00212 |
Metal ion binding protein | Vv_10004892 | XM_002281195 | GSVIVT01022185001 | At4g39700 | -1.045 | 0.00016 | -1.325 | 0.00011 |
AAA-type ATPase family protein | Vv_10010867 | XM_002268820 | GSVIVT01023336001 | At3g28600 | -1.28 | 0.00026 | -1.176 | 0.00015 |
AAA-type ATPase family protein | Vv_10012487 | XM_002280929 | GSVIVT01015385001 | At3g24530 | -0.805 | 0.00072 | -0.859 | 0.00099 |
Aspartyl protease protein | Vv_10002995 | XM_002265735 | GSVIVT01036694001 | At3g12700 | -2.0 | 6.00E-05 | -1.975 | 3.00E-05 |
Protease inhibitor | Vv_10001691 | XM_002266266 | GSVIVT01012936001 | At1g17860 | -3.046 | 1.00E-05 | -0.872 | 0.00418 |
PS60 protein/multicopper oxidase | Vv_10000492 | XM_002282178 | GSVIVT01023902001 | At1g76160 | -0.922 | 0.00088 | -0.846 | 0.00141 |