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Table 1 Functional categorization of cDNAs identified from microarray analysis.

From: Fortunella margarita Transcriptional Reprogramming Triggered by Xanthomonas citri subsp. citri

Putative Function Cluster P-Value ID M-Value
     6 hpi 24 hpi 72 hpi
OXIDATIVE BURST/STRESS, APOPTOSIS
*Thioredoxin f A 0.093 KLLFI3-F09 +0.093 +0.037 +0.913
*Peroxidase C 0.046 KLLRI2-F09 -2.370 -0.280 -0.380
*Class III peroxidase B 0.018 KSLFI1-H03 +1.643 +0.323 +1.053
Glycosyl transferase-like
protein
D 0.004 KSLFI7-F12 -2.237 +0.103 -0.243
*Glutathione peroxidase D 0.024 KSLFI1-B02 -2.143 -0.027 -0.287
*Formate dehydrogenase B 0.041 KLLRI2-G05 +0.930 -0.447 +0.173
*CuZn-superoxide dismutase B 0.035 KLLFI3-A03 +0.523 -0.267 -0.086
*Protease inhibitor B 0.015 KLLFI2-D02 -1.987 +0.653 +0.510
*lon protease homologue D 0.074 KSLFIV1-H05 +1.220 -0.607 +0.240
*Dehydroascorbate
reductase
C 0.012 KSLR1-F02 -2.033 -0.040 -0.223
*Glutathione peroxidase C 0.021 KLLFII3-G07 0.267 -0.237 -0.247
*Ubiquitin-conjugating enzyme ubc7 B 0.015 CSL1-A02 -0.163 -0.390 +0.320
Catalase (EC 1.11.1.6)CAT-2 C 0.041 KLLFI1-F11 -1.343 -0.207 -0.253
*Amine oxidase A 0.035 KSLFI3-G05 -0.553 -0.720 +0.493
Hydroperoxide lyase B 0.012 CSL2F2-A01 -2.963 -0.427 -0.167
Benzoic acid salicylic acid methyltransferase C 0.034 KLLRI2-C03 +0.103 -0.233 -0.263
*1-aminocyclopropane-1-
carboxylate oxidase
B 0.008 KSLFI7-H12 -1.993 +0.183 -0.310
PHOTOSYNTHESIS
Chlorophyll ab binding protein B 0.006 KLLFIII3-A06 -2.057 +0.217 +0.563
Chloroplast photosystemII 22kda B 0.15 KLLFIII3-E08 -0.717 +0.433 -0.050
DEFENCE
*Pathogenesis-related protein 1a A 0.054 KSLFI3-H10 -1.803 -0.077 -0.407
*SABP2 B 0.008 KLLRI2-G01 +0.787 -0.093 -0.317
*Beta-1,3-glucanase B 0.024 KSLFII1-C07 -1.91 -0.760 -0.167
Phenylalanine-ammonia lyase D 0.016 KSLFI4-F04 -2.58 -0.013 -0.147
Pathogenesis-related protein 4-1 A 0.032 KLLFII2-G01 +0.07 -0.210 -0.353
*Class IV chitinase C 0.626 KLLRI2-D05 +0.01 -0.3 -0.28
*NDR1 homologue C 0.132 KLLFII2-E03 -0.91 -0.74 -0.04
*Trypsin inhibitor A 0.011 KSLFIII1-H12 -0.40 +1.05 +0.303
*Trypsin inhibitor B 0.008 KLLFIII3-F03 -3.20 +0.197 -0.490
*HSR203J-like protein C 0.003 KSLFI3-C10 +0.073 -0.09 -0.303
*DND1 [Arabidopsis
thaliana]
D 0.074 KLLRI2-B05 -0.203 -0.580 +0.310
*Bax inhibitor-1 C 0.01 KLLFIII2-E02 +0.233 +0.083 +0.06
*Latex-abundant (caspase
-like)
B 0.090 KLLRI2-A12 +0.230 +0.173 +0.09
*Zinc finger protein B 0.017 KSLFI6-C10 +2.387 +0.000 +0.663
  1. M-value is the base two logarithm of the ratio between the background-subtracted foreground intensity measured in the red and the green channels.
  2. These ESTs were identified as having a cy5 cy3 ratio > ± 1.5 for four out of six spots on the microarrays.
  3. - Putative function determined with the Gene ontology sequence description
  4. - Cluster: The cluster to which the putative gene belongs according to Blast2 GO functional analysis.
  5. - P-value associated to the statistical analysis for differential expression adjusted for multiple comparisons.
  6. - ID: Assigned at selection.
  7. - M-Value: A metric for comparing a gene's mRNA-expression level between two distinct experimental conditions; in this case mock inoculated vs Xcc inoculated.
  8. - (-) means down-regulated where M-value < 0 while (+) is up-regulated where M-value > 0
  9. Table 1. includes (*) genes that are discussed in the text.
  10. While other sequences that might not be mentioned in the text but show interesting gene expression profiles.