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Table 1 Functional categorization of cDNAs identified from microarray analysis.

From: Fortunella margarita Transcriptional Reprogramming Triggered by Xanthomonas citri subsp. citri

Putative Function

Cluster

P-Value

ID

M-Value

    

6 hpi

24 hpi

72 hpi

OXIDATIVE BURST/STRESS, APOPTOSIS

*Thioredoxin f

A

0.093

KLLFI3-F09

+0.093

+0.037

+0.913

*Peroxidase

C

0.046

KLLRI2-F09

-2.370

-0.280

-0.380

*Class III peroxidase

B

0.018

KSLFI1-H03

+1.643

+0.323

+1.053

Glycosyl transferase-like

protein

D

0.004

KSLFI7-F12

-2.237

+0.103

-0.243

*Glutathione peroxidase

D

0.024

KSLFI1-B02

-2.143

-0.027

-0.287

*Formate dehydrogenase

B

0.041

KLLRI2-G05

+0.930

-0.447

+0.173

*CuZn-superoxide dismutase

B

0.035

KLLFI3-A03

+0.523

-0.267

-0.086

*Protease inhibitor

B

0.015

KLLFI2-D02

-1.987

+0.653

+0.510

*lon protease homologue

D

0.074

KSLFIV1-H05

+1.220

-0.607

+0.240

*Dehydroascorbate

reductase

C

0.012

KSLR1-F02

-2.033

-0.040

-0.223

*Glutathione peroxidase

C

0.021

KLLFII3-G07

0.267

-0.237

-0.247

*Ubiquitin-conjugating enzyme ubc7

B

0.015

CSL1-A02

-0.163

-0.390

+0.320

Catalase (EC 1.11.1.6)CAT-2

C

0.041

KLLFI1-F11

-1.343

-0.207

-0.253

*Amine oxidase

A

0.035

KSLFI3-G05

-0.553

-0.720

+0.493

Hydroperoxide lyase

B

0.012

CSL2F2-A01

-2.963

-0.427

-0.167

Benzoic acid salicylic acid methyltransferase

C

0.034

KLLRI2-C03

+0.103

-0.233

-0.263

*1-aminocyclopropane-1-

carboxylate oxidase

B

0.008

KSLFI7-H12

-1.993

+0.183

-0.310

PHOTOSYNTHESIS

Chlorophyll ab binding protein

B

0.006

KLLFIII3-A06

-2.057

+0.217

+0.563

Chloroplast photosystemII 22kda

B

0.15

KLLFIII3-E08

-0.717

+0.433

-0.050

DEFENCE

*Pathogenesis-related protein 1a

A

0.054

KSLFI3-H10

-1.803

-0.077

-0.407

*SABP2

B

0.008

KLLRI2-G01

+0.787

-0.093

-0.317

*Beta-1,3-glucanase

B

0.024

KSLFII1-C07

-1.91

-0.760

-0.167

Phenylalanine-ammonia lyase

D

0.016

KSLFI4-F04

-2.58

-0.013

-0.147

Pathogenesis-related protein 4-1

A

0.032

KLLFII2-G01

+0.07

-0.210

-0.353

*Class IV chitinase

C

0.626

KLLRI2-D05

+0.01

-0.3

-0.28

*NDR1 homologue

C

0.132

KLLFII2-E03

-0.91

-0.74

-0.04

*Trypsin inhibitor

A

0.011

KSLFIII1-H12

-0.40

+1.05

+0.303

*Trypsin inhibitor

B

0.008

KLLFIII3-F03

-3.20

+0.197

-0.490

*HSR203J-like protein

C

0.003

KSLFI3-C10

+0.073

-0.09

-0.303

*DND1 [Arabidopsis

thaliana]

D

0.074

KLLRI2-B05

-0.203

-0.580

+0.310

*Bax inhibitor-1

C

0.01

KLLFIII2-E02

+0.233

+0.083

+0.06

*Latex-abundant (caspase

-like)

B

0.090

KLLRI2-A12

+0.230

+0.173

+0.09

*Zinc finger protein

B

0.017

KSLFI6-C10

+2.387

+0.000

+0.663

  1. M-value is the base two logarithm of the ratio between the background-subtracted foreground intensity measured in the red and the green channels.
  2. These ESTs were identified as having a cy5 cy3 ratio > ± 1.5 for four out of six spots on the microarrays.
  3. - Putative function determined with the Gene ontology sequence description
  4. - Cluster: The cluster to which the putative gene belongs according to Blast2 GO functional analysis.
  5. - P-value associated to the statistical analysis for differential expression adjusted for multiple comparisons.
  6. - ID: Assigned at selection.
  7. - M-Value: A metric for comparing a gene's mRNA-expression level between two distinct experimental conditions; in this case mock inoculated vs Xcc inoculated.
  8. - (-) means down-regulated where M-value < 0 while (+) is up-regulated where M-value > 0
  9. Table 1. includes (*) genes that are discussed in the text.
  10. While other sequences that might not be mentioned in the text but show interesting gene expression profiles.
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BMC Plant Biology

ISSN: 1471-2229

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