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Table 2 Transcriptome assembly and annotation statistics

From: Chemical and transcriptional responses of Norway spruce genotypes with different susceptibility to Heterobasidion spp. infection

Assembly

 

Annotation of isotigs

 

Total reads

492 102

Nr. with BLASTx

13 390

Total bases

146391859

homology

 

Assembled reads

242 206

Nr. GO Annotated

8 468

Inferred read error

1.51%

GO Annotations

41 330

Q40*

94.53%

Nr. with KEGG EC

3 605

Singletons

5 5334

Total KEGG EC Nr.

45 183

Isogroups ("genes")

9 678

Nr. InterproscanTotal

79 194

Isotigs ("transcripts")

14 364

  

Isotig N50

769

  

Mean no. isotigs per isogroup

1.5

  

Isogroups with one Isotig

7239

  

Contigs ("exons")

17228

  

Mean no. contigs per isotig

2

  
  1. * Q40 of contigs of at least 500 bp length