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Table 2 Selection of genes differentially expressed during ripening.

From: Transcript and metabolite analysis in Trincadeira cultivar reveals novel information regarding the dynamics of grape ripening

Probe ID

2007 34vs32

2007 35vs32

2007 36vs32

2008 35vs32

2008 36vs32

Unique gene 12× ID

Annotation

CARBOHYDRATE AND AMINO ACID METABOLISMS

VVTU1012_at

.

.

1.77

.

1.61

GSVIVT01033747001

Pyruvate kinase, cytosolic isozyme

VVTU1135_at

3.64

3.82

5.69

2.07

2.77

GSVIVT01012723001

Soluble starch synthase 3, chloroplast precursor

VVTU12019_s_at

.

4.57

5.37

2.3

4.07

GSVIVT01022356001

Aldehyde dehydrogenase

VVTU12208_at

.

-4

-9.68

-2.33

-8.28

GSVIVT01011979001

Phosphoenolpyruvate carboxylase

VVTU12879_at

.

2.73

2.19

2.78

2.37

GSVIVT01024263001

RCP1 (ROOT CAP 1)

VVTU16699_s_at

.

-7.79

-20.35

-2.1

-12.01

GSVIVT01024174001

Fructose-bisphosphate aldolase, chloroplast precursor

VVTU16744_s_at

-1.62

-1.72

-1.82

.

-2.66

GSVIVT01015018001

Sucrose synthase

VVTU17960_s_at

.

.

1.59

.

1.72

GSVIVT01033791001

Fructose-bisphosphate aldolase cytoplasmic isozyme

VVTU1903_at

.

.

-2.26

.

-1.67

GSVIVT01016173001

Malate dehydrogenase [NADP], chloroplast precursor (NADP-MDH)

VVTU1967_s_at

.

1.54

1.94

1.84

2.09

GSVIVT01014206001

Phosphoenolpyruvate carboxylase

VVTU2658_at

.

.

1.5

1.54

1.58

GSVIVT01011700001

Phosphoglucomutase, cytoplasmic

VVTU4210_at

4.86

12.95

23.65

7.73

14.17

GSVIVT01033062001

Alcohol dehydrogenase

VVTU4280_at

3.26

10

13.91

7.05

12.89

GSVIVT01037186001

Sucrose-phosphate synthase 1

VVTU5246_at

.

.

2.14

.

1.86

GSVIVT01006474001

Malate dehydrogenase glyoxysomal

VVTU5612_at

.

-1.85

-4.85

.

-3.3

GSVIVT01013403001

Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor

VVTU7116_at

.

1.82

2.38

1.81

2.19

GSVIVT01008714001

Alpha-amylase/1,4-alpha-D-glucan glucanohydrolase

VVTU8170_at

.

-2.21

-4.09

-1.76

-2.67

GSVIVT01032446001

Glycogen synthase kinase 3 beta

VVTU9506_at

1.54

2.57

1.65

2.66

.

GSVIVT01004839001

Snf1-related protein kinase srk2f

VVTU11854_s_at

.

1.79

1.82

1.51

2.08

GSVIVT01000391001

Glutamate decarboxylase 1 (GAD 1)

VVTU13950_s_at

-1.61

-4.55

-28.07

-2.79

-25.73

GSVIVT01033402001

Glutamate dehydrogenase 1

VVTU14998_at

.

.

4.38

.

2.72

GSVIVT01034731001

Gamma-aminobutyric acid transporter

VVTU22880_s_at

.

1.64

2.02

1.85

3.24

GSVIVT01016467001

Pyrroline-5-carboxylate synthetase

VVTU35297_s_at

.

.

1.55

.

1.7

GSVIVT01036689001

Isocitrate dehydrogenase, chloroplast precursor

VVTU35625_s_at

.

-2.57

-5.34

.

-2.93

GSVIVT01036719001

Succinate-semialdehyde dehydrogenase (SSADH1)

VVTU37879_s_at

.

-2.09

.

.

.

GSVIVT01038714001

GLT1 (NADH-dependent glutamate synthase 1 gene)

VVTU5646_at

.

3.17

3.09

2.18

3.15

GSVIVT01016390001

Proline transporter 1 (ProT1)

VVTU7588_at

.

-2.81

.

-1.73

-1.85

GSVIVT01036483001

Proline oxidase

VVTU977_at

.

.

1.68

.

1.68

GSVIVT01033607001

Cystathionine beta-lyase

STRESS RESPONSE

VVTU12535_s_at

.

.

5.35

.

4.41

GSVIVT01027990001

Glutathione-conjugate transporter (MRP10)

VVTU14104_s_at

.

.

1.73

.

2.13

GSVIVT01033815001

Monodehydroascorbate reductase

VVTU15985_at

.

.

1.59

.

.

GSVIVT01025104001

L-ascorbate peroxidase 1, cytosolic (APX1)

VVTU16784_s_at

.

2.43

3.15

2.94

4.68

GSVIVT01019766001

Phospholipid hydroperoxide glutathione peroxidase

VVTU1974_s_at

.

52.07

88.22

11.76

189.67

GSVIVT01035256001

Glutathione S-transferase 26 GSTF12

VVTU23718_at

.

2.05

.

1.74

2.42

GSVIVT01037479001

L-ascorbate oxidase

VVTU27380_s_at

.

-1.71

-2.42

.

-2.27

GSVIVT01021793001

GDP-mannose 3,5-epimerase 1

VVTU35602_s_at

-1.74

.

-4

.

-1.69

GSVIVT01025551001

L-ascorbate peroxidase 1, cytosolic (APX1)

VVTU38305_s_at

.

3.59

1.63

2.34

2.53

GSVIVT01003998001

Latex cyanogenic beta glucosidase

VVTU40144_at

.

.

.

1.62

.

.

Dehydroascorbate reductase

VVTU40443_s_at

1.94

1.63

1.97

1.83

2.12

GSVIVT01026951001

Beta-cyanoalanine synthase

VVTU4641_at

.

-2.92

-15.77

-1.58

-8.94

GSVIVT01009079001

L-ascorbate peroxidase, chloroplast

VVTU4643_at

.

.

.

-2.03

-2.51

GSVIVT01010646001

L-idonate dehydrogenase

VVTU4990_at

.

2.11

1.97

3.08

2.44

GSVIVT01019757001

Gamma-glutamylcysteine synthetase

VVTU5671_s_at

-2.05

-2.59

-2.86

.

.

GSVIVT01005966001

Dehydroascorbate reductase

VVTU6270_at

.

1.55

2.08

.

1.85

GSVIVT01011626001

Myrosinase precursor

VVTU687_at

.

145.08

240.58

71.81

373.26

GSVIVT01022752001

Anthraniloyal-CoA: methanol anthraniloyal transferase

VVTU7379_at

.

2

1.6

3.1

2.47

GSVIVT01029079001

Glutathione reductase

VVTU8069_at

.

.

-3.45

.

-2.58

GSVIVT01033574001

L-Galactono-1,4-lactone dehydrogenase

SECONDARY METABOLISM

VVTU13083_at

.

-15.92

-10.95

-7.51

-7.09

GSVIVT01006396001

Anthocyanidin reductase

VVTU13266_s_at

-3.1

-5.11

-3.57

-4.5

-2.72

GSVIVT01009731001

Isoflavone reductase protein 4

VVTU13618_x_at

3.48

2.48

.

2.75

.

GSVIVT01028812001

UDP-glucose: anthocyanidin 5,3-O-glucosyltransferase

VVTU13951_at

.

.

3.24

.

1.79

GSVIVT01022411001

Isoflavone reductase

VVTU17578_s_at

.

12.13

14.82

5.19

29.13

GSVIVT01024419001

UDP-glucose:flavonoid 3-O-glucosyltransferase

VVTU20756_at

-3.14

-3.56

-4.09

-2.73

-3.17

GSVIVT01023841001

Dihydroflavonol-4-reductase

VVTU22627_at

.

.

.

.

2.1

GSVIVT01000191001

CYP81E1 Isoflavone 2'-hydroxylase

VVTU39787_s_at

.

-2.43

.

-2.3

4.3

GSVIVT01018781001

Flavonone- 3-hydroxylase

VVTU9453_at

.

.

7.92

1.87

4.75

GSVIVT01019691001

Quercetin 3-O-methyltransferase 1

VVTU9714_at

3.43

4.02

5.02

2.81

3.82

GSVIVT01021355001

Flavonol synthase

VVTU11849_s_at

.

2.15

3.41

1.5

2.64

GSVIVT01026510001

Alcohol dehydrogenase 6

VVTU13316_s_at

.

.

.

-2.21

.

GSVIVT01036331001

(-)-Germacrene D synthase

VVTU21725_at

.

5.59

7.3

7.18

9.32

GSVIVT01026829001

(+)-Neomenthol dehydrogenase

VVTU2626_at

2.55

35.87

19.1

18.1

15.87

GSVIVT01008069001

Isopiperitenol dehydrogenase

VVTU27826_x_at

.

2.5

2.18

1.55

2.01

GSVIVT01003150001

Cinnamyl alcohol dehydrogenase

VVTU33502_at

2.75

.

-2.96

.

-3.52

GSVIVT01032178001

Cinnamyl alcohol dehydrogenase

VVTU37595_s_at

.

2.08

.

1.86

.

GSVIVT01030474001

Hydroperoxide lyase (HPL1)

VVTU4754_at

-1.64

-4.03

-6.42

-4.25

-7.87

GSVIVT01008854001

Caffeic acid methyltransferase

VVTU8254_at

.

4.4

7.29

2.5

2.95

GSVIVT01036862001

9-cis-epoxycarotenoid dioxygenase

METABOLISM AND SIGNALING OF GROWTH REGULATORS

VVTU1335_at

1.65

-6.21

-7.81

-3.38

-6.13

GSVIVT01000176001

Indole-3-acetic acid-amido synthetase GH3.2

VVTU16083_at

.

.

-2.96

.

-2.18

GSVIVT01030905001

Auxin efflux carrier family

VVTU16124_at

.

.

-2.05

-1.82

-2.87

GSVIVT01031663001

PIN1

VVTU1813_at

-3.17

-12.35

-48.38

-4.69

-33.36

GSVIVT01017046001

IAA9

VVTU18738_s_at

.

14.93

37.41

22.78

87.35

GSVIVT01038622001

Auxin-responsive SAUR29

VVTU2445_s_at

-2.2

-13.15

-17.4

-6.43

-9.33

GSVIVT01015350001

Auxin-responsive protein IAA27

VVTU2614_s_at

.

2.08

1.68

1.5

1.79

GSVIVT01033011001

Transport inhibitor response 1 protein

VVTU3361_at

3.34

9.44

9.88

6.46

9.06

GSVIVT01017158001

IAA19

VVTU35572_s_at

2.81

2.25

4.41

3.04

8.58

GSVIVT01020159001

IAA-amino acid hydrolase 1 (ILR1)

VVTU3560_at

-1.83

.

2.93

.

3.86

GSVIVT01037892001

Indole-3-acetic acid-amido synthetase GH3.8

VVTU35909_s_at

.

-2.42

.

-2.25

-1.69

GSVIVT01026429001

Auxin Efflux Carrier

VVTU38338_x_at

-1.59

-11.61

-14.02

-9.85

-22.64

GSVIVT01024135001

Auxin-responsive SAUR31

VVTU7869_at

-5.63

-6.03

-10.54

-6.2

-4.14

GSVIVT01010995001

Transport inhibitor response 1

VVTU12042_at

1.76

.

.

.

.

GSVIVT01005455001

1-Aminocyclopropane-1-carboxylate synthase

VVTU12870_s_at

.

.

1.83

.

2.14

GSVIVT01025105001

MAPK (MPK3)

VVTU13344_at

.

-1.68

-2.66

.

-4.88

GSVIVT01006065001

1-Aminocyclopropane-1-carboxylate oxidase 1

VVTU1588_at

.

.

1.62

.

1.99

GSVIVT01038085001

Ethylene receptor 1 (ETR1)

VVTU18607_s_at

3.66

29.17

28.93

14.04

40.01

GSVIVT01035911001

Ethylene-responsive transcription factor ERF003

VVTU19389_s_at

.

.

1.73

.

2.05

GSVIVT01036213001

Ethylene receptor (EIN4)

VVTU2683_s_at

.

-1.8

.

-2.23

.

GSVIVT01035856001

EIN3-binding F-box protein 2

VVTU35437_at

.

-1.58

-5.17

2.26

2.62

.

Ethylene-responsive transcription factor ERF105

VVTU5165_at

.

-2.11

-1.79

.

-1.57

GSVIVT01008900001

1-Aminocyclopropane-1-carboxylate synthase

VVTU5909_at

.

1.9

1.59

1.87

1.62

GSVIVT01011670001

1-Aminocyclopropane-1-carboxylate oxidase

VVTU8172_at

.

.

2.31

2.76

12.06

GSVIVT01004798001

Ethylene responsive element binding factor 1

VVTU8555_at

.

-3.58

-4.58

-2.09

-5.28

GSVIVT01037473001

Ethylene-insensitive 3 (EIN3)

VVTU11913_at

-2.04

-5.96

-11.68

-3.88

-16.02

GSVIVT01018733001

Jasmonate O-methyltransferase

VVTU16057_at

.

9.26

10.63

5.74

7.16

GSVIVT01009616001

Allene oxide synthase

VVTU1657_s_at

-2.04

.

-2.45

-2.41

-2.7

GSVIVT01005061001

Methyl jasmonate esterase

VVTU16654_at

1.58

2.35

1.62

1.89

1.77

GSVIVT01031706001

IMP dehydrogenase

VVTU17030_s_at

.

-11.17

-8.28

.

-4.33

GSVIVT01025923001

12-Oxophytodienoate reductase 2

VVTU23697_at

.

1.6

2.16

1.99

2.72

GSVIVT01016368001

Coronatine-insensitive protein 1

VVTU3032_at

.

.

.

.

1.67

GSVIVT01027057001

JAR1-like protein

VVTU34392_at

2.43

.

.

.

.

GSVIVT01013156001

MYC jasmonic acid 3

VVTU35149_at

.

-1.72

.

-1.55

.

GSVIVT01024198001

Enhanced disease susceptibility 5 EDS5

VVTU39811_s_at

.

2.76

50.75

.

38.44

GSVIVT01021514001

Jasmonate ZIM domain-containing protein 8

VVTU4273_s_at

-1.53

.

-1.58

.

-1.98

GSVIVT01008453001

Jasmonate ZIM domain-containing protein 3

VVTU7003_at

-2.47

-12.82

-13.47

-6.21

-13.03

GSVIVT01036445001

Allene oxide cyclase

VVTU7560_at

.

.

2.04

1.65

2.99

GSVIVT01015181001

Regulatory protein NPR1 (Nonexpresser of PR genes 1)

VVTU1269_s_at

.

1.52

.

1.56

.

GSVIVT01020222001

Spermidine synthase

VVTU12839_at

.

1.64

2.39

3.44

4.27

GSVIVT01024167001

Arginine decarboxylase (Fragment)

VVTU12964_s_at

1.88

.

1.81

1.8

2.66

.

S-Adenosylmethionine decarboxylase proenzyme

VVTU37047_at

.

.

1.87

.

3.11

GSVIVT01007669001

Copper amine oxidase

VVTU5224_at

.

.

2.17

.

1.51

GSVIVT01028700001

Spermine synthase

VVTU5226_at

.

2.19

1.76

1.69

2.42

GSVIVT01020812001

Amine oxidase

VVTU6472_at

-2.27

2.07

.

1.86

2.07

GSVIVT01004079001

Copper amine oxidase

VVTU8738_s_at

.

2.3

2.17

.

.

GSVIVT01033651001

S-Adenosylmethionine synthetase

VVTU12347_s_at

.

.

.

2.03

.

GSVIVT01009074001

SnRK2-8

VVTU19049_s_at

.

.

2.01

.

1.95

GSVIVT01037491001

UBP1 interacting protein 2a (UBA2a)

VVTU22232_at

.

-1.91

-2.11

.

.

GSVIVT01003554001

Snf1 protein kinase 2-3 akip ost1

VVTU28731_s_at

2.01

4.9

4.9

4.67

3.13

GSVIVT01015308001

ABI1 (ABA insensitive 1)

VVTU14956_at

2.22

1.89

1.75

1.8

1.55

GSVIVT01008164001

BIM1 (BES1-interacting Myc-like protein 1)

VVTU24849_at

.

-1.92

-1.91

-3.07

-4.02

GSVIVT01017237001

CYP734A7 castasterone 26-hydroxylase

VVTU4905_s_at

.

.

-2.3

-2.41

-2.1

.

Brassinosteroid-responsive ring-H2 (BRH1)

VVTU647_at

.

-12.51

-17.26

-3.26

-21.67

GSVIVT01036558001

Brassinosteroid-6-oxidase

VVTU20270_s_at

-1.93

.

3.68

.

7.79

GSVIVT01033610001

ARR3 typeA

VVTU28950_s_at

.

-4.38

-11.11

-1.85

-3.95

GSVIVT01004944001

Cytokinin-repressed protein CR9

VVTU31519_s_at

3.4

.

.

1.6

.

GSVIVT01027443001

Pseudo-response regulator 9 (APRR9)

VVTU9094_s_at

.

-5.82

-7.62

-5.17

-14.3

GSVIVT01035468001

Cytokinin dehydrogenase 7

VVTU9297_at

-2.85

-8.33

-6.37

-3.83

-3.2

GSVIVT01007835001

ARR6 typeA

VVTU9337_at

2.81

2.61

4.69

1.92

6.66

GSVIVT01035051001

ARR1 typeB

VVTU13918_at

.

10.7

40.6

27.15

38.26

GSVIVT01031830001

Gibberellin 20 oxidase 2

VVTU15195_at

.

-1.59

4.64

.

2.89

GSVIVT01022014001

Gibberellin receptor GID1L1

VVTU1752_at

3.79

12.25

12.84

4.95

4.98

GSVIVT01011037001

Gibberellin receptor GID1L2

VVTU7332_at

-2.92

-6.26

-6.69

-4.5

-7.87

GSVIVT01009099001

Gibberellin 20 oxidase 2

VVTU8591_at

.

-4.73

-4.46

-4.09

-5.78

GSVIVT01034945001

Gibberellin 2-oxidase

SIGNAL TRANSDUCTION

VVTU11835_at

.

1.55

.

1.76

1.62

GSVIVT01018839001

MADS box transcription factor TM6 (TM6) APETALA3

VVTU17564_s_at

.

8.95

11.56

4.78

18.34

GSVIVT01022664001

Myb VvMYBA3 [Vitis vinifera]

VVTU18199_s_at

.

.

1.62

1.76

1.85

GSVIVT01033067001

SEPALLATA3

VVTU2522_at

.

1.56

2.63

.

3.24

GSVIVT01016175001

NAC domain-containing protein 78

VVTU27392_s_at

.

3.53

4.76

2.16

3.94

.

Scarecrow-like transcription factor 8 (SCL8)

VVTU3046_s_at

.

-6.64

-5.33

-2.63

-3.25

GSVIVT01027182001

MYBPA1 protein [Vitis vinifera]

VVTU3183_at

.

2.05

.

1.54

.

GSVIVT01024921001

Zinc finger (C3HC4-type RING finger)

VVTU3258_at

-1.75

-126.42

-210.41

-28.95

-221.25

GSVIVT01037819001

LIM domain protein WLIM1

VVTU37071_at

.

.

.

.

2.06

GSVIVT01034155001

Scarecrow-like transcription factor 9 (SCL9)

VVTU40803_s_at

2.35

4.93

9.8

1.54

6.18

GSVIVT01034968001

WRKY DNA-binding protein 48

VVTU9543_at

.

2.12

8.24

1.77

8.89

GSVIVT01022269001

Myb TKI1 (TSL-KINASE INTERACTING PROTEIN 1)

VVTU11578_at

1.6

12.25

4.66

2.82

1.77

GSVIVT01008070001

Receptor protein kinase

VVTU11917_at

2.55

1.53

.

2.18

.

GSVIVT01019481001

BZip transcription factor G-BOX BINDING FACTOR 3

VVTU13369_at

.

1.85

.

1.97

.

GSVIVT01017690001

CBL-interacting protein kinase 1 (CIPK1)

VVTU2538_at

.

1.68

.

1.83

1.5

GSVIVT01033306001

CALCIUM-DEPENDENT PROTEIN KINASE 32 CPK32

VVTU26057_at

.

5.13

12.44

8.86

17.28

GSVIVT01016073001

STE20/SPS1 proline-alanine-rich protein kinase

VVTU27362_at

1.53

1.74

2.13

2.55

5.29

GSVIVT01034540001

bZIP transcription factor

VVTU3691_at

.

3.73

.

1.6

.

GSVIVT01010053001

Dof zinc finger protein DOF3.5

VVTU38545_at

.

1.76

3.18

.

3.59

GSVIVT01008327001

Wall-associated kinase 4

VVTU5563_at

.

2.6

3.52

2.09

2.53

GSVIVT01034897001

VirE2-interacting protein (VIP1)

VVTU8084_at

.

.

2.1

.

2.62

GSVIVT01036465001

Receptor protein kinase PERK1

VVTU9535_at

.

2.78

4.54

3.85

4.3

GSVIVT01002864001

Receptor protein kinase PERK1

VVTU9861_at

.

1.92

2.09

1.85

2.19

.

Wall-associated kinase

LIGHT SIGNALING, CIRCADIAN CLOCK, EPIGENETIC FACTORS AND TRANSPOSONS

VVTU22197_at

.

.

1.95

1.52

1.79

GSVIVT01007965001

Timing of CAB expression 1 protein

VVTU2284_at

.

1.76

4.05

.

3.36

GSVIVT01035337001

Early flowering 3

VVTU2454_s_at

2.4

.

1.77

3.04

2.15

GSVIVT01001405001

Gigantea protein

VVTU3515_s_at

-1.65

-1.58

-1.74

-1.89

-2.32

GSVIVT01027456001

Myb CCA1 (Circadian Clock Associated 1)

VVTU40867_x_at

.

2.19

.

2.47

2.44

GSVIVT01018044001

ELIP1 (Early Light-Inducible Protein)

VVTU5883_at

.

-1.59

.

2.17

2.7

GSVIVT01030081001

Phytochrome defective C (PHYC)

VVTU10989_at

-2.75

1.77

.

-2.1

1.55

GSVIVT01033746001

Retrotransposon protein, Ty1-copia subclass

VVTU11309_at

.

-1.72

-2.05

.

.

GSVIVT01032746001

Chromatin remodeling 42

VVTU12696_at

.

2.96

2.08

2.38

1.99

GSVIVT01033971001

Transposon protein, CACTA, En/Spm sub-class

VVTU15783_at

.

.

2.05

.

2.48

.

Retrotransposon protein, unclassified

VVTU2258_at

2.29

7.14

2.59

1.77

2.61

GSVIVT01010060001

DNA-3-methyladenine glycosidase I

VVTU32711_at

.

.

.

2.38

.

GSVIVT01017791001

Chromatin-remodeling protein 11

VVTU3690_at

1.53

2.15

3.56

2.05

3.61

GSVIVT01007671001

Histone deacetylase HDA6

VVTU38460_at

.

.

.

2.68

2.01

GSVIVT01026952001

ATBRM/CHR2 (Arabidopsis thaliana brahma)

VVTU5491_at

.

.

2.27

.

2.08

.

Transposase

VVTU5815_at

.

.

1.64

.

1.68

GSVIVT01020136001

Histone deacetylase complex, SIN3 component

VVTU6149_s_at

.

2.09

-1.85

1.54

.

GSVIVT01033869001

Transposon protein, Mutator sub-class

VVTU8524_at

-1.64

-1.75

-2.04

.

-1.57

.

Cytosine methyltransferase (DRM2)

VVTU8618_at

.

.

2.12

.

2.34

GSVIVT01007544001

Histone acetyltransferase ELP3

VVTU87_at

.

.

-2.41

.

-1.74

GSVIVT01007870001

Histone deacetylase HDA05

  1. The selection considered a fold change ≥ 1.5 and FDR < 0.05 or fold change ≤ -.1.5 and FDR < 0.05).