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Table 1 Summary of Pathway Enrichment Analysis

From: Transcriptional profiling of Medicago truncatula under salt stress identified a novel CBF transcription factor MtCBF4 that plays an important role in abiotic stress responses

Profile Pathway Nb. of Enzymes Nb. of Enzymes submitted P-value
a Glycolysis/Gluconeogenesis 26 13 1.47e-3
  Starch and sucrose metabolism 33 15 2.15e-3
  Streptomycin biosynthesis 4 4 2.43e-3
  Biosynthesis of steroids 28 12 1.09e-2
  Ascorbate and aldarate metabolism 8 5 1.64e-2
  Pentose and glucuronate interconversions 12 6 3.16e-2
  Anthocyanin biosynthesis 2 2 4.98e-2
  1,2-Dichloroethane degradation 2 2 4.98e-2
  Flavonoid biosynthesis 10 5 4.98e-2
b Starch and sucrose metabolism 33 9 4.51e-3
  Anthocyanin biosynthesis 2 2 1.09e-2
  Glycerolipid metabolism 17 5 2.51e-2
  Phenylpropanoid biosynthesis 7 3 2.85e-2
  Sphingolipid metabolism 7 3 2.85e-2
  Isoflavonoid biosynthesis 3 2 3.04e-2
  Valine, leucine and isoleucine degradation 18 5 3.19e-2
c Starch and sucrose metabolism 33 13 9.17e-4
  Glycolysis/Gluconeogenesis 26 11 1.17e-3
  Carbon fixation 22 8 1.66e-2
  Valine, leucine and isoleucine biosynthesis 13 5 4.52e-2
  Pyrimidine metabolism 26 8 4.59e-2
d Phenylpropanoid biosynthesis 7 6 3.30e-6
  Flavonoid biosynthesis 10 4 9.25e-3
  Isoflavonoid biosynthesis 3 2 2.39e-2
  Metabolism of xenobiotics by cytochrome 4 2 4.50e-2
e Flavonoid biosynthesis 10 5 5.25e-4
  Anthocyanin biosynthesis 2 2 6.39e-3
  Phenylpropanoid biosynthesis 7 3 1.38e-2
  Isoflavonoid biosynthesis 3 2 1.82e-2
  Zeatin biosynthesis 4 2 3.45e-2
  Glycerolipid metabolism 17 4 4.08e-2
  Starch and sucrose metabolism 33 6 4.18e-2
  Methionine metabolism 18 4 4.94e-2
f Galactose metabolism 18 5 4.30e-3
  Starch and sucrose metabolism 33 6 1.60e-2
  Glycosphingolipid biosynthesis - globoseries 5 2 3.69e-2
g Flavonoid biosynthesis 10 4 5.92e-3
  Anthocyanin biosynthesis 2 2 6.64e-3
  Starch and sucrose metabolism 33 7 1.36e-2
  Phenylpropanoid biosynthesis 7 3 1.45e-2
  Aminoacyl-tRNA biosynthesis 21 5 2.29e-2
h Starch and sucrose metabolism 33 10 5.11e-4
  Anthocyanin biosynthesis 2 2 9.06e-3
  Flavonoid biosynthesis 10 4 1.04e-2
  Drug metabolism - cytochrome P450 6 3 1.36e-2
  Phenylpropanoid biosynthesis 7 3 2.22e-2
  3-Chloroacrylic acid degradation 3 2 2.55e-2
  Glycolysis/Gluconeogenesis 26 6 3.04e-2
  Bile acid biosynthesis 4 2 4.79e-2
  Metabolism of xenobiotics by cytochrome P450 4 2 4.79e-2
  Streptomycin biosynthesis 4 2 4.79e-2
i Pentose and glucuronate interconversions 12 3 1.30e-2
  Phosphatidylinositol signaling system 13 3 1.64e-2
  Pyrimidine metabolism 26 4 2.33e-2
  Inositol phosphate metabolism 15 3 2.46e-2
  Phenylpropanoid biosynthesis 7 2 3.44e-2
  Benzoxazinone biosynthesis 1 1 4.41e-2
j Flavonoid biosynthesis 10 4 2.74e-3
  Phenylpropanoid biosynthesis 7 3 8.13e-3
  Indole and ipecac alkaloid biosynthesis 5 2 3.85e-2
k Anthocyanin biosynthesis 2 2 2.76e-3
  Flavonoid biosynthesis 10 3 1.29e-2
  Drug metabolism - cytochrome P450 6 2 3.62e-2
  1. Pathway enrichment analysis was done by PathExpress tool. Only statistic significant (p-value < = 0.05) pathways left. Profiles numbered from a to k were listed in Figure 2. The "No. of Enzymes" column means how many enzymes of each pathway are in the array, the "No. of Enzymes submitted" column means how many enzymes belong to each profile.