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Table 1 Comparison of Highly Abundant Seed Stored Transcripts in Barley and Arabidopsis

From: Transcriptional regulatory programs underlying barley germination and regulatory functions of Gibberellin and abscisic acid

Barley Probe-Set ID

Rank1

Functional Category

Gene Annotation

Rank2

Ara ID

Orthologs3

Contig5481_at

32

nutrient reservoir

late embryogenesis abundant protein

70

AT3G53040

Y

HV09J08u_s_at

13

nutrient reservoir

cupin family protein

67

AT3G22640

Y

Contig1353_s_at

38

nutrient reservoir

cupin family protein

67

AT3G22640

Y

HD01C09w_s_at

63

nutrient reservoir

cupin family protein

67

AT3G22640

Y

Contig2408_at

52

nutrient reservoir

late embryogenesis abundant protein

151

AT3G15670

Y

Contig2407_s_at

59

nutrient reservoir

late embryogenesis abundant protein

151

AT3G15670

Y

Contig4008_at

83

nutrient reservoir

seed maturation protein PM28

146

AT3G12960

Y

Contig1832_x_at

2

nutrient reservoir

Late embryogenesis abundant protein

45

AT2G40170

Y

Contig1832_at

4

nutrient reservoir

Late embryogenesis abundant protein

45

AT2G40170

Y

Contig1830_at

6

nutrient reservoir

Late embryogenesis abundant protein

45

AT2G40170

Y

Contig1830_s_at

10

nutrient reservoir

Late embryogenesis abundant protein

45

AT2G40170

Y

Contig1832_s_at

14

nutrient reservoir

Late embryogenesis abundant protein

45

AT2G40170

Y

HVSMEi0008A06f2_s_at

55

nutrient reservoir

seed maturation protein PM41,

11

AT2G21820

Y

Contig4760_s_at

72

nutrient reservoir

late embryogenesis abundant protein

21

AT1G01470

Y

Contig811_x_at

7

nutrient reservoir

B3-hordein (clone pB7)

  

Y

EBed07_SQ001_B14_s_at

24

nutrient reservoir

seed storage protein

  

Y

Contig785_x_at

35

nutrient reservoir

hordein B precursor

  

Y

Contig523_x_at

82

nutrient reservoir

B3-hordein (clone pB7)

  

Y

Contig793_x_at

85

nutrient reservoir

B3-hordein

  

Y

HB01O23r_x_at

28

nutrient reservoir

hordein B precursor

  

N

Contig540_x_at

39

nutrient reservoir

B3-hordein (clone pB7)

  

N

Contig585_x_at

67

nutrient reservoir

hordein B precursor

  

N

Contig2519_x_at

27

Stress

chitinase

  

Y

Contig3288_x_at

56

Stress

heat shock protein 17.6-II

33

AT5G12030*

Y

Contig3286_s_at

91

Stress

17.6 kDa class II heat shock protein

33

AT5G12030*

Y

Contig2007_s_at

89

Stress

18 kDa class I heat shock protein

1

AT3G46230*

Y

Contig2010_at

97

Stress

17.4 kDa class I heat shock protein

1

AT3G46230

Y

Contig797_at

50

stress

thionin (THI2)

64

AT2G15010*

Y

HB18H23r_s_at

49

Stress

17.6 kDa class I small heat shock protein

404

AT1G53540

Y

HB16L13r_x_at

80

Stress

17.6 kDa class II heat shock protein

  

Y

Contig1713_s_at

22

stress

dehydrin (RAB18)

338

AT5G66400

Y

Contig1763_s_at

18

stress

PDF2.1; peptidase inhibitor

93

AT2G02120*

Y

HT11E22u_x_at

5

stress

gamma-thionin precursor

  

N

Contig375_s_at

16

stress

gamma-thionin precursor

  

N

Contig459_s_at

26

protein biosynthesis

elongation factor 1-alpha/EF-1-alpha

51

AT5G60390

Y

Contig1024_at

23

protein biosynthesis

40S ribosomal protein S8 (RPS8A)

368

AT5G20290

Y

EBed02_SQ003_C14_s_at

46

protein biosynthesis

40S ribosomal protein S8 (RPS8A)

368

AT5G20290

Y

HY09G23u_s_at

37

protein biosynthesis

elongation factor 1B alpha-subunit 2 (eEF1Balpha2)

470

AT5G19510

Y

HS09B02u_s_at

95

protein biosynthesis

eukaryotic translation initiation factor SUI1

377

AT4G27130*

Y

Contig2094_s_at

64

protein biosynthesis

40S ribosomal protein S23 (RPS23B)

474

AT3G09680*

Y

HM01F24T_s_at

92

protein biosynthesis

60S ribosomal protein L23 (RPL23C)

361

AT3G04400

Y

Contig545_s_at

88

protein biosynthesis

60S ribosomal protein L8 (RPL8A)

385

AT2G18020

Y

Contig692_s_at

94

protein biosynthesis

60S ribosomal protein L8 (RPL8A)

385

AT2G18020

Y

Contig1607_at

77

protein biosynthesis

eukaryotic translation initiation factor 5A,

313

AT1G26630

Y

rbaal18i13_s_at

9

protein biosynthesis

60S ribosomal protein L5

  

Y

HS18F06u_s_at

34

protein biosynthesis

60S ribosomal protein L7A (RPL7aB)

  

Y

HT06A08u_s_at

36

protein biosynthesis

60S ribosomal protein L10 (RPL10B)

  

Y

HA12A08u_s_at

44

protein biosynthesis

40S ribosomal protein S18 (RPS18C)

  

Y

Contig1809_at

48

protein biosynthesis

60S acidic ribosomal protein P2 (RPP2A)

  

Y

HW02F22u_s_at

54

protein biosynthesis

60S ribosomal protein L15 (RPL15B)

  

Y

Contig2290_s_at

65

protein biosynthesis

60S ribosomal protein L31 (RPL31C)

  

Y

Contig3535_s_at

71

protein biosynthesis

60S acidic ribosomal protein P3 (RPP3A)

  

Y

Contig1938_s_at

73

protein biosynthesis

60S ribosomal protein L15 (RPL15B)

  

Y

Contig1476_at

87

protein biosynthesis

60S ribosomal protein L21 (RPL21C)

  

Y

Contig2373_s_at

100

protein biosynthesis

60S ribosomal protein L24 (RPL24B)

  

Y

Contig726_x_at

68

protein biosynthesis

60S ribosomal protein L41 (RPL41D)

  

N

Contig107_s_at

96

protein biosynthesis

60S ribosomal protein L41 (RPL41D)

  

N

HU02F20u_s_at

11

protein degradation

ubiquitin-conjugating enzyme

132

AT1G64230

Y

Contig2088_s_at

81

protein degradation

TIBHB trypsin inhibitor

  

N

HT06G21u_s_at

40

glycolysis

enolase

  

Y

Contig940_s_at

74

glycolysis

fructose-bisphosphate aldolase, putative

  

Y

Contig1188_s_at

1

lipid metabolism

lipid transfer protein 6 (LTP6)

242

AT2G38530*

Y

HVSMEk0006G04r2_s_at

17

lipid metabolism

glycine-rich protein/oleosin

129

AT5G40420

Y

Contig3234_s_at

8

lipid metabolism

glycine-rich protein/oleosin

159

AT4G25140

Y

EBma08_SQ004_C15_s_at

99

metal binding protein

selenium-binding protein, putative

  

Y

Contig1432_at

12

metal binding protein

plant EC metallothionein-like family 15 protein

192

AT2G23240

Y

Contig2483_at

3

redox

oxidoreductase

148

AT1G54870

Y

Contig3461_at

86

redox

glutaredoxin, putative

171

AT5G63030*

Y

Contig2853_at

45

redox

antioxidant/thioredoxin peroxidase

359

AT1G48130

Y

HT11A05u_s_at

93

other

aldose reductase, putative

13

AT5G01670

Y

Contig5448_at

30

other

lactoylglutathione lyase family protein

  

Y

HY02N18u_s_at

33

other

nucleoside diphosphate kinase 1

  

Y

HM02P13u_s_at

70

other

S-adenosylmethionine synthetase 2

  

Y

Contig146_s_at

20

other

glycine-rich RNA-binding protein

  

Y

Contig97_at

41

other

TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)

113

AT3G16640*

Y

Contig97_s_at

31

other

translationally controlled tumor family protein

113

AT3G16640

Y

HT03K14r_s_at

66

other

tonoplast intrinsic protein, alpha/alpha-TIP (TIP3)

63

AT1G73190

Y

Contig3690_s_at

53

other

AWPM-19-like membrane family protein

141

AT1G04560

Y

Contig1071_s_at

25

other

glycine-rich protein

  

Y

HVSMEi0013L12r2_s_at

29

other

plastocyanin-like domain-containing protein

  

Y

Contig4431_s_at

84

other

F5 protein-related/4F5 protein-related

  

Y

Contig360_x_at

57

other

glycine-rich RNA-binding protein (GRP7)

  

Y

Contig4493_s_at

42

unknown

unknown

  

Y

Contig1955_s_at

58

unknown

unknown

  

Y

Contig1752_s_at

60

unknown

unknown

  

Y

HVSMEf0021D08f_s_at

61

unknown

unknown

  

Y

HK06G13r_s_at

78

unknown

unknown

  

Y

HS17I13u_s_at

98

unknown

unknown

  

Y

Contig1751_s_at

15

unknown

unknown

  

N

Contig11968_at

19

unknown

unknown

  

N

HB07K19r_x_at

21

unknown

unknown

  

N

Contig15682_at

43

unknown

unknown

  

N

Contig372_s_at

47

unknown

unknown

  

N

HD11C22r_s_at

51

unknown

unknown

  

N

HU03F22u_at

62

unknown

unknown

  

N

HB18O02r_at

69

unknown

unknown

  

N

EBpi07_SQ001_P12_at

75

unknown

unknown

  

N

HVSMEl0014O24f_x_at

76

unknown

unknown

  

N

Contig18451_at

79

unknown

unknown

  

N

Contig9754_at

90

unknown

unknown

  

N

  1. 1: rank of barley transcript abundance in dry seeds.
  2. 2: rank of Arabidopsis transcript abundance in dry seeds
  3. 3. Presence of Arabidopsis genes orthologous to the barley genes: Yes (Y) and No (N)
  4. *: Arabidopsis genes homologous to the barley genes at e-value less than -10.