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Table 1 Comparison of Highly Abundant Seed Stored Transcripts in Barley and Arabidopsis

From: Transcriptional regulatory programs underlying barley germination and regulatory functions of Gibberellin and abscisic acid

Barley Probe-Set ID Rank1 Functional Category Gene Annotation Rank2 Ara ID Orthologs3
Contig5481_at 32 nutrient reservoir late embryogenesis abundant protein 70 AT3G53040 Y
HV09J08u_s_at 13 nutrient reservoir cupin family protein 67 AT3G22640 Y
Contig1353_s_at 38 nutrient reservoir cupin family protein 67 AT3G22640 Y
HD01C09w_s_at 63 nutrient reservoir cupin family protein 67 AT3G22640 Y
Contig2408_at 52 nutrient reservoir late embryogenesis abundant protein 151 AT3G15670 Y
Contig2407_s_at 59 nutrient reservoir late embryogenesis abundant protein 151 AT3G15670 Y
Contig4008_at 83 nutrient reservoir seed maturation protein PM28 146 AT3G12960 Y
Contig1832_x_at 2 nutrient reservoir Late embryogenesis abundant protein 45 AT2G40170 Y
Contig1832_at 4 nutrient reservoir Late embryogenesis abundant protein 45 AT2G40170 Y
Contig1830_at 6 nutrient reservoir Late embryogenesis abundant protein 45 AT2G40170 Y
Contig1830_s_at 10 nutrient reservoir Late embryogenesis abundant protein 45 AT2G40170 Y
Contig1832_s_at 14 nutrient reservoir Late embryogenesis abundant protein 45 AT2G40170 Y
HVSMEi0008A06f2_s_at 55 nutrient reservoir seed maturation protein PM41, 11 AT2G21820 Y
Contig4760_s_at 72 nutrient reservoir late embryogenesis abundant protein 21 AT1G01470 Y
Contig811_x_at 7 nutrient reservoir B3-hordein (clone pB7)    Y
EBed07_SQ001_B14_s_at 24 nutrient reservoir seed storage protein    Y
Contig785_x_at 35 nutrient reservoir hordein B precursor    Y
Contig523_x_at 82 nutrient reservoir B3-hordein (clone pB7)    Y
Contig793_x_at 85 nutrient reservoir B3-hordein    Y
HB01O23r_x_at 28 nutrient reservoir hordein B precursor    N
Contig540_x_at 39 nutrient reservoir B3-hordein (clone pB7)    N
Contig585_x_at 67 nutrient reservoir hordein B precursor    N
Contig2519_x_at 27 Stress chitinase    Y
Contig3288_x_at 56 Stress heat shock protein 17.6-II 33 AT5G12030* Y
Contig3286_s_at 91 Stress 17.6 kDa class II heat shock protein 33 AT5G12030* Y
Contig2007_s_at 89 Stress 18 kDa class I heat shock protein 1 AT3G46230* Y
Contig2010_at 97 Stress 17.4 kDa class I heat shock protein 1 AT3G46230 Y
Contig797_at 50 stress thionin (THI2) 64 AT2G15010* Y
HB18H23r_s_at 49 Stress 17.6 kDa class I small heat shock protein 404 AT1G53540 Y
HB16L13r_x_at 80 Stress 17.6 kDa class II heat shock protein    Y
Contig1713_s_at 22 stress dehydrin (RAB18) 338 AT5G66400 Y
Contig1763_s_at 18 stress PDF2.1; peptidase inhibitor 93 AT2G02120* Y
HT11E22u_x_at 5 stress gamma-thionin precursor    N
Contig375_s_at 16 stress gamma-thionin precursor    N
Contig459_s_at 26 protein biosynthesis elongation factor 1-alpha/EF-1-alpha 51 AT5G60390 Y
Contig1024_at 23 protein biosynthesis 40S ribosomal protein S8 (RPS8A) 368 AT5G20290 Y
EBed02_SQ003_C14_s_at 46 protein biosynthesis 40S ribosomal protein S8 (RPS8A) 368 AT5G20290 Y
HY09G23u_s_at 37 protein biosynthesis elongation factor 1B alpha-subunit 2 (eEF1Balpha2) 470 AT5G19510 Y
HS09B02u_s_at 95 protein biosynthesis eukaryotic translation initiation factor SUI1 377 AT4G27130* Y
Contig2094_s_at 64 protein biosynthesis 40S ribosomal protein S23 (RPS23B) 474 AT3G09680* Y
HM01F24T_s_at 92 protein biosynthesis 60S ribosomal protein L23 (RPL23C) 361 AT3G04400 Y
Contig545_s_at 88 protein biosynthesis 60S ribosomal protein L8 (RPL8A) 385 AT2G18020 Y
Contig692_s_at 94 protein biosynthesis 60S ribosomal protein L8 (RPL8A) 385 AT2G18020 Y
Contig1607_at 77 protein biosynthesis eukaryotic translation initiation factor 5A, 313 AT1G26630 Y
rbaal18i13_s_at 9 protein biosynthesis 60S ribosomal protein L5    Y
HS18F06u_s_at 34 protein biosynthesis 60S ribosomal protein L7A (RPL7aB)    Y
HT06A08u_s_at 36 protein biosynthesis 60S ribosomal protein L10 (RPL10B)    Y
HA12A08u_s_at 44 protein biosynthesis 40S ribosomal protein S18 (RPS18C)    Y
Contig1809_at 48 protein biosynthesis 60S acidic ribosomal protein P2 (RPP2A)    Y
HW02F22u_s_at 54 protein biosynthesis 60S ribosomal protein L15 (RPL15B)    Y
Contig2290_s_at 65 protein biosynthesis 60S ribosomal protein L31 (RPL31C)    Y
Contig3535_s_at 71 protein biosynthesis 60S acidic ribosomal protein P3 (RPP3A)    Y
Contig1938_s_at 73 protein biosynthesis 60S ribosomal protein L15 (RPL15B)    Y
Contig1476_at 87 protein biosynthesis 60S ribosomal protein L21 (RPL21C)    Y
Contig2373_s_at 100 protein biosynthesis 60S ribosomal protein L24 (RPL24B)    Y
Contig726_x_at 68 protein biosynthesis 60S ribosomal protein L41 (RPL41D)    N
Contig107_s_at 96 protein biosynthesis 60S ribosomal protein L41 (RPL41D)    N
HU02F20u_s_at 11 protein degradation ubiquitin-conjugating enzyme 132 AT1G64230 Y
Contig2088_s_at 81 protein degradation TIBHB trypsin inhibitor    N
HT06G21u_s_at 40 glycolysis enolase    Y
Contig940_s_at 74 glycolysis fructose-bisphosphate aldolase, putative    Y
Contig1188_s_at 1 lipid metabolism lipid transfer protein 6 (LTP6) 242 AT2G38530* Y
HVSMEk0006G04r2_s_at 17 lipid metabolism glycine-rich protein/oleosin 129 AT5G40420 Y
Contig3234_s_at 8 lipid metabolism glycine-rich protein/oleosin 159 AT4G25140 Y
EBma08_SQ004_C15_s_at 99 metal binding protein selenium-binding protein, putative    Y
Contig1432_at 12 metal binding protein plant EC metallothionein-like family 15 protein 192 AT2G23240 Y
Contig2483_at 3 redox oxidoreductase 148 AT1G54870 Y
Contig3461_at 86 redox glutaredoxin, putative 171 AT5G63030* Y
Contig2853_at 45 redox antioxidant/thioredoxin peroxidase 359 AT1G48130 Y
HT11A05u_s_at 93 other aldose reductase, putative 13 AT5G01670 Y
Contig5448_at 30 other lactoylglutathione lyase family protein    Y
HY02N18u_s_at 33 other nucleoside diphosphate kinase 1    Y
HM02P13u_s_at 70 other S-adenosylmethionine synthetase 2    Y
Contig146_s_at 20 other glycine-rich RNA-binding protein    Y
Contig97_at 41 other TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) 113 AT3G16640* Y
Contig97_s_at 31 other translationally controlled tumor family protein 113 AT3G16640 Y
HT03K14r_s_at 66 other tonoplast intrinsic protein, alpha/alpha-TIP (TIP3) 63 AT1G73190 Y
Contig3690_s_at 53 other AWPM-19-like membrane family protein 141 AT1G04560 Y
Contig1071_s_at 25 other glycine-rich protein    Y
HVSMEi0013L12r2_s_at 29 other plastocyanin-like domain-containing protein    Y
Contig4431_s_at 84 other F5 protein-related/4F5 protein-related    Y
Contig360_x_at 57 other glycine-rich RNA-binding protein (GRP7)    Y
Contig4493_s_at 42 unknown unknown    Y
Contig1955_s_at 58 unknown unknown    Y
Contig1752_s_at 60 unknown unknown    Y
HVSMEf0021D08f_s_at 61 unknown unknown    Y
HK06G13r_s_at 78 unknown unknown    Y
HS17I13u_s_at 98 unknown unknown    Y
Contig1751_s_at 15 unknown unknown    N
Contig11968_at 19 unknown unknown    N
HB07K19r_x_at 21 unknown unknown    N
Contig15682_at 43 unknown unknown    N
Contig372_s_at 47 unknown unknown    N
HD11C22r_s_at 51 unknown unknown    N
HU03F22u_at 62 unknown unknown    N
HB18O02r_at 69 unknown unknown    N
EBpi07_SQ001_P12_at 75 unknown unknown    N
HVSMEl0014O24f_x_at 76 unknown unknown    N
Contig18451_at 79 unknown unknown    N
Contig9754_at 90 unknown unknown    N
  1. 1: rank of barley transcript abundance in dry seeds.
  2. 2: rank of Arabidopsis transcript abundance in dry seeds
  3. 3. Presence of Arabidopsis genes orthologous to the barley genes: Yes (Y) and No (N)
  4. *: Arabidopsis genes homologous to the barley genes at e-value less than -10.