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Table 2 Haplotype details for the core set of starch biosynthesis/degradation genes.

From: Haplotyping, linkage mapping and expression analysis of barley genes regulated by terminal drought stress influencing seed quality

EST

BLAST search result

Number of haplotypes

SNPs

InDels

Approx. sequence length (bp)

HY09D18

Sucrose synthase 1

5

18

1

360

HF08A21

Sucrose synthase 2

7

14

 

550

HA31O14

Sucrose synthase 2

5

4

 

750

HF21A17

Hexokinase

5

4

 

350

HY04O18

ADP-glucose pyrophosphorylase large subunit

5

4

 

350

HB16O10

ADP-glucose pyrophosphorylase small subunit (alternatively spliced)

4

5

 

1050

HA31F12

ADP-glucose pyrophosphorylase small subunit

3

2

 

1000

HB05N09

Starch synthase I

2

1

1

900

HF05C15

Starch synthase IV

4

9

 

650

HY09J12

Granule-bound starch synthase 1b

4

5

 

350

HB30O07

Starch branching enzyme I

10

45

8

550

HB21K16

Starch branching enzyme IIa

2

1

 

550

HZ53C02

Beta-amylase

3

2

 

450

HF17A10

Beta amylase

4

3

1

280

HF11O03

Sd 1 beta-amylase

5

5

 

280

HZ60P11

Alpha glucosidase

4

35

3

1800

HB20O07

Gamma 2 hordein

6

9

 

300

 

Σ

78

166

14