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Table 2 Transcript derived fragments (TDFs), which were specifically expressed in incompatible interaction by BLASTN analyzing, commonly or differentially expressed in the incompatible and compatible interactions between wheat cultivar Suwon 11 and Puccinia striiformis f. sp. tritici pathotypes CYR23 and CYR31, respectively.

From: Differential gene expression in incompatible interaction between wheat and stripe rust fungus revealed by cDNA-AFLP and comparison to compatible interaction

 

Accession

12 hpi

24 hpi

48 hpi

TDF

No.

I

C

I

C

I

C

Up-regulated in both interactions

     

S11_CY23_129-1

FG618817

+

+

-

-

+

NC

S11_CY23_Contig39

FG618708

NC

NC

+

-

NC

NC

S11_CY23_42b-2

FG618898

++

+

+

+

+

-

S11_CY23_253-1

FG618863

+

+

+

NC

+

+

S11_CY23_130-5

FG618819

NC

NC

+

+

+

NC

S11_CY23_Contig66

FG618735

++

NC

++

+

+

NC

S11_CY23_274-5*

FG618919

+++

++

++

NC

+

+

S11_CY23_299-3*

FG618916

+++

++

+

+

NC

NC

S11_CY23_90-6

FG618918

+

+

+

NC

NC

NC

S11_CY23_Contig32*

FG618701

+++

++

++

NC

+

NC

S11_CY23_Contig69

FG618738

+

+

++

NC

+

NC

S11_CY23_39-1*

FG618892

++

NC

+

NC

+

+

S11_CY23_181-4

FG618829

+

NC

+

+

NC

NC

S11_CY23_Contig7

FG618676

+

NC

-

-

NC

NC

S11_CY23_Contig58

FG618727

+

+

NC

NC

+

-

S11_CY23_Contig93

FG618762

+

NC

-

NC

-

-

S11_CY23_Contig98

FG618767

+

+

+

NC

+

NC

S11_CY23_Contig130

FG618798

+

+

+

NC

+

+

S11_CY23_349-2

FG618877

+

NC

+

+

+

NC

S11_CY23_Contig134

FG618802

-

-

+

+

NC

NC

S11_CY23_209-5

FG618844

+

+

+

NC

NC

NC

S11_CY23_257-1-3*

FG618866

+

+

+++

++

+

NC

S11_CY23_257-3

FG618869

++

+

NC

+

+

NC

S11_CY23_397p-5

FG618896

NC

NC

NC

NC

+

+

S11_CY23_376-4*

FG618889

+++

++

++

NC

+

NC

S11_CY23_257-1-5*

FG618868

+++

+

NC

NC

+

NC

S11_CY23_360-3*

FG618886

NC

NC

+

NC

++

+

Down-regulated in both interactions

     

S11_CY23_Contig4

FG618673

NC

NC

-

-

-

NC

S11_CY23_236-3

FG618859

-

-

NC

-

NC

NC

S11_CY23_231-1

FG618855

-

-

NC

-

NC

NC

S11_CY23_Contig5

FG618674

-

-

NC

NC

-

-

S11_CY23_Contig126

FG618794

-

-

NC

NC

NC

NC

Up in incompatible, but did not change in compatible

     

S11_CY23_193-4

FG618834

+

NC

+++

NC

+

NC

S11_CY23_128-2

FG618814

-

NC

+

NC

+

NC

S11_CY23_351-6

FG618917

++

NC

NC

NC

NC

NC

S11_CY23_469-1

FG618920

+

NC

+

NC

+++

NC

S11_CY23_397p-3

FG618895

+

NC

NC

NC

NC

NC

S11_CY23_Contig99

FG618768

NC

NC

NC

NC

+

NC

S11_CY23_148-5

FG618824

NC

NC

+

NC

NC

NC

S11_CY23_181-5

FG618830

+

NC

+

NC

NC

NC

Up in incompatible and down in compatible

     

S11_CY23_Contig73

FG618742

NC

NC

+

-

NC

-

S11_CY23_Contig105

FG618774

NC

-

+

-

+

NC

S11_CY23_12-1-3

FG618811

+

--

+

--

NC

-

  1. * Strongly induced in incompatible interaction
  2. NC No changes in expression profiling
  3. + Transcripts >2 folds
  4. ++ Transcripts > 2 folds and < 5 folds
  5. +++ Transcripts >10 folds
  6. - Transcripts were repressed
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BMC Plant Biology

ISSN: 1471-2229

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