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Table 2 Transcript derived fragments (TDFs), which were specifically expressed in incompatible interaction by BLASTN analyzing, commonly or differentially expressed in the incompatible and compatible interactions between wheat cultivar Suwon 11 and Puccinia striiformis f. sp. tritici pathotypes CYR23 and CYR31, respectively.

From: Differential gene expression in incompatible interaction between wheat and stripe rust fungus revealed by cDNA-AFLP and comparison to compatible interaction

  Accession 12 hpi 24 hpi 48 hpi
TDF No. I C I C I C
Up-regulated in both interactions      
S11_CY23_129-1 FG618817 + + - - + NC
S11_CY23_Contig39 FG618708 NC NC + - NC NC
S11_CY23_42b-2 FG618898 ++ + + + + -
S11_CY23_253-1 FG618863 + + + NC + +
S11_CY23_130-5 FG618819 NC NC + + + NC
S11_CY23_Contig66 FG618735 ++ NC ++ + + NC
S11_CY23_274-5* FG618919 +++ ++ ++ NC + +
S11_CY23_299-3* FG618916 +++ ++ + + NC NC
S11_CY23_90-6 FG618918 + + + NC NC NC
S11_CY23_Contig32* FG618701 +++ ++ ++ NC + NC
S11_CY23_Contig69 FG618738 + + ++ NC + NC
S11_CY23_39-1* FG618892 ++ NC + NC + +
S11_CY23_181-4 FG618829 + NC + + NC NC
S11_CY23_Contig7 FG618676 + NC - - NC NC
S11_CY23_Contig58 FG618727 + + NC NC + -
S11_CY23_Contig93 FG618762 + NC - NC - -
S11_CY23_Contig98 FG618767 + + + NC + NC
S11_CY23_Contig130 FG618798 + + + NC + +
S11_CY23_349-2 FG618877 + NC + + + NC
S11_CY23_Contig134 FG618802 - - + + NC NC
S11_CY23_209-5 FG618844 + + + NC NC NC
S11_CY23_257-1-3* FG618866 + + +++ ++ + NC
S11_CY23_257-3 FG618869 ++ + NC + + NC
S11_CY23_397p-5 FG618896 NC NC NC NC + +
S11_CY23_376-4* FG618889 +++ ++ ++ NC + NC
S11_CY23_257-1-5* FG618868 +++ + NC NC + NC
S11_CY23_360-3* FG618886 NC NC + NC ++ +
Down-regulated in both interactions      
S11_CY23_Contig4 FG618673 NC NC - - - NC
S11_CY23_236-3 FG618859 - - NC - NC NC
S11_CY23_231-1 FG618855 - - NC - NC NC
S11_CY23_Contig5 FG618674 - - NC NC - -
S11_CY23_Contig126 FG618794 - - NC NC NC NC
Up in incompatible, but did not change in compatible      
S11_CY23_193-4 FG618834 + NC +++ NC + NC
S11_CY23_128-2 FG618814 - NC + NC + NC
S11_CY23_351-6 FG618917 ++ NC NC NC NC NC
S11_CY23_469-1 FG618920 + NC + NC +++ NC
S11_CY23_397p-3 FG618895 + NC NC NC NC NC
S11_CY23_Contig99 FG618768 NC NC NC NC + NC
S11_CY23_148-5 FG618824 NC NC + NC NC NC
S11_CY23_181-5 FG618830 + NC + NC NC NC
Up in incompatible and down in compatible      
S11_CY23_Contig73 FG618742 NC NC + - NC -
S11_CY23_Contig105 FG618774 NC - + - + NC
S11_CY23_12-1-3 FG618811 + -- + -- NC -
  1. * Strongly induced in incompatible interaction
  2. NC No changes in expression profiling
  3. + Transcripts >2 folds
  4. ++ Transcripts > 2 folds and < 5 folds
  5. +++ Transcripts >10 folds
  6. - Transcripts were repressed