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Figure 8 | BMC Plant Biology

Figure 8

From: Transcript profiling of common bean (Phaseolus vulgaris L.) using the GeneChip®Soybean Genome Array: optimizing analysis by masking biased probes

Figure 8

Over-representation analysis of the hyper-variable and the highly-conserved probe set groups. The Hyper-variable probe set group retained only 1 or 2 probes, and the highly conserved probe sets group retained 10 or 11 (all) probes after masking with a signal intensity threshold of 80. The Fisher's exact test was performed using the PageMan over-representation analysis module. Over- or under-represented classes in each group were identified after Bonferroni correction (z-value cutoff value = 1.0). The resulting values were then false color coded using a scale of -4 to +4. Blue and red indicate over- and under-representation of the corresponding class, respectively. See methods for details.

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