Skip to main content

Table 1 GO analyses of genes with alternative NAGNAG acceptor site

From: Identification and characterization of NAGNAG alternative splicing in the moss Physcomitrella patens

Organism/subset Name GO Term FDR (q-value) # in test group # in reference group # non annot. test # non annot. reference group
P. patens alternative NAGNAG genes Sanger support cytoplasmic part GO:0044444 0.0133 78 5407 100 11894
  plastid GO:0009536 0.04291 42 2607 136 14694
  membrane-bound organelle GO:0043227 0.04291 89 6778 89 10523
  intracellular membrane-bound organelle GO:0043231 0.04291 89 6778 89 10523
  intracellular part GO:0044424 0.04963 105 8388 73 8913
P. patens alternative NAGNAG genes Sanger and/or 454 support cytoplasmic part GO:0044444 3.52E-04 168 5317 232 11762
  plastid GO:0009536 8.35E-04 90 2559 310 14520
  membrane-bound organelle GO:0043227 8.35E-04 196 6671 204 10408
  intracellular membrane-bound organelle GO:0043231 8.35E-04 196 6671 204 10408
  intracellular part GO:0044424 0.00379 229 8264 171 8815
  intracellular GO:0005622 8.35E-04 251 9029 149 8050
  cytoplasm GO:0005737 3.78E-04 191 6312 209 10767
  mitochondrion GO:0005739 0.04193 53 1553 347 15526
  thylakoid GO:0009579 0.02355 12 187 388 16892
  organelle GO:0043226 0.00436 207 7373 193 9706
  intracellular organelle GO:0043229 0.00436 207 7373 193 9706
A. thaliana alternative NAGNAG genes combined (Iida et al., 2008 and Schindler et al., 2008) plastid GO:0009536 0.0474 50 3021 192 17594
  membrane-bound organelle GO:0043227 2.28E-04 113 6959 129 13656
  intracellular membrane-bound organelle GO:0043231 2.28E-04 113 6959 129 13656
  intracellular GO:0005622 5.17E-05 136 8421 106 12194
  organelle GO:0043226 1.73E-04 119 7287 123 13328
  intracellular organelle GO:0043229 1.73E-04 119 7287 123 13328
  nucleic acid binding GO:0003676 5.98E-06 71 3230 171 17385
  nucleus GO:0005634 2.02E-04 51 2342 191 18273
  DNA binding GO:0003677 2.28E-04 49 2250 193 18365
  intracellular part GO:0044424 2.82E-04 124 7881 118 12734
  cell part GO:0044464 0.0027 159 11257 83 9358
  RNA binding GO:0003723 0.01 15 506 227 20109
  binding GO:0005488 0.01174 132 9231 110 11384
  nucleobase, nucleoside, nucleotide and nucleic acid metabolic process GO:0006139 0.01314 47 2608 195 18007
  transcription factor activity GO:0003700 0.01314 33 1646 209 18969
  transcription regulator activity GO:0030528 0.04363 34 1852 208 18763