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Table 1 Features of the SuperSAGE libraries from wounded and 18:3-Glu elicited leaves

From: SuperSAGE analysis of the Nicotiana attenuata transcriptome after fatty acid-amino acid elicitation (FAC): identification of early mediators of insect responses

Library

W**

F**

Total

(%)

Sequenced tags

227,536

127,394

354,930

(100)

Number of unique transcripts (UniTags)

11,942

10,117

12,774

 

Number of singletons

11,951

7,153

19,104

 

Abundance classes of UniTags*

    

Very high-abundant: > 5,000 copies.million-1

24

22

46

(0.2)

High-abundant: > 1,000 - 5,000 copies.million-1

127

133

260

(1.2)

Mid-abundant: 100 - 1,000 copies.million-1

1,178

1,084

2,262

(10.2)

Low-abundant: < 100 copies.million-1

10,613

8,878

19,491

(88.4)

Total

11,942

10,117

  

Copy number of Tags in Abundance classes*

    

Very high-abundant: > 5,000 copies.million-1

2.34 × 105

2.34 × 105

4.68 × 105

(23.4)

High-abundant: > 1,000 - 5,000 copies.million-1

2.36 × 105

2.43 × 105

4.80 × 105

(24.0)

Mid-abundant: 100 - 1,000 copies.million-1

3.32 × 105

3.16 × 105

6.48 × 105

(32.4)

Low-abundant: < 100 copies.million-1

1.98 × 105

2.07 × 105

4.05 × 105

(20.2)

Total

1.00 × 106

1.00 × 106

  
  1. * Values normalized to 1 million tags
  2. ** W: wounded; F: 18:3-Glu elicited