Table 1 BLASTN analyses of pigeonpea unigenes against legume and model plant ESTs
|
High quality ESTs generated Unigenes |
UG-I
5,680 3,316 |
UG-II
3,788 1,308 |
UG-III
9,468 4,557 |
UG-IV
10,376 5,085 |
|---|---|---|---|---|
| Legume ESTs | ||||
| Pigeonpea (Cajanus cajan) (908) |
314 (9.4%) |
224 (17.1%) |
508 (11.1%) |
1,052 (20.6%) |
| Chickpea (Cicer arietinum) (7,097) |
585 (17.6%) |
507 (38.7%) |
1,059 (23.2%) |
1,155 (22.7%) |
| Soybean (Glycine max) (880,561) |
1,690 (50.9%) |
946 (72.3%) |
2,750 (60.3%) |
2,865 (56.3%) |
| Cowpea (Vigna unguiculata) (183,757) |
1,230 (37.0%) |
817 (62.4%) |
1,988 (43.6%) |
2,215 (43.5%) |
| Medicago (Medicago truncatula) (249,625) |
1,214 (36.6%) |
803 (61.3%) |
1,963 (43.0%) |
2,153 (42.3%) |
| Lotus (Lotus japonicus) (183,153) |
1,015 (30.6%) |
738 (56.4%) |
1,698 (37.2%) |
1,861 (36.5%) |
| Common bean (Phaseolus vulgaris) (83,448) |
1,202 (36.2%) |
784 (59.9%) |
1,927 (42.2%) |
2,146 (42.2%) |
|
Significant similarity with ESTs of at least one legume species |
1,768 (53.3%) |
1,001 (76.5%) |
2,757 (60.5%) |
3,201 (62.9%) |
| Significant similarity across legume ESTs |
172 (5.1%) |
156 (11.9%) |
274 (6.0%) |
383 (7.5%) |
| No similarity with legume species |
39 (1.1%) |
4 (0.3%) |
39 (0.8%) |
42 (0.8%) |
| Model plant ESTs | ||||
| Arabidopsis (Arabidopsis thaliana) (1,527,298) |
913 (27.5%) |
667 (50.9%) |
1,536 (33.7%) |
1,669 (32.8) |
| Rice (Oryza sativa) (1,240,613) |
810 (24.4%) |
520 (39.7%) |
1,294 (28.3%) |
1,389 (27.3%) |
| Poplar (Poplus alba) (418,223) |
982 (29.6%) |
678 (51.8%) |
1,617 (35.4%) |
1,753 (34.4%) |
|
Significant similarity with ESTs of at least one Model plant species |
1,161 (35.0%) |
763 (58.3%) |
1,872 (41.0%) |
2,019 (39.7%) |
|
Significant similarity across ESTs of all model plant species |
635 (19.1%) |
460 (35.1%) |
1,066 (23.3%) |
1,135 (22.3%) |
|
Significant similarity with ESTs of at least one plant species analyzed |
1,839 (55.4%) |
1,015 (77.5%) |
2,839 (62.2%) |
3,280 (64.5%) |
|
Significant similarity across ESTs of all plant species analyzed |
150 (4.5%) |
114 (8.7%) |
227 (4.9%) |
299 (5.8%) |
| No similarity with ESTs of any plant species |
39 (1.1%) |
4 (0.3%) |
39 (0.8%) |
41 (0.8%) |