Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean

BMC Plant Biology

Table 5 Ten genes at the LG I protein QTL region with high expression evidence.

Sequence ID	Strand	Start	Stop	A1	A2	A3	A4	B1	B2	B3	B4	Total reads	Top informative Uniprot match	E-value	Description
Glyma20 g19510.1	+	27301033	27301656	1301	575	810	535	1335	1012	404	296	6268	na		na
Glyma20 g21190.1	+	30239601	30241733	290	210	339	212	407	175	225	190	2048	Q94LL1	1 × 10^-112	Putative 40S ribosomal protein
Glyma20 g22430.1	+	32447769	32449767	240	136	201	194	385	227	156	156	1695	Q6L417	1 × 10^-153	Putative isopenicillin N epimerase
Glyma20 g22680.1	+	32606778	32610170	245	187	274	146	347	133	132	114	1578	Q38JU3	1 × 10^-100	ADP ribosylation factor 002
Glyma20 g21230.1	-	30345305	30346033	305	118	234	48	509	185	111	52	1562	Q7G823	5 × 10^-39	Histone H4
Glyma20 g22090.1	+	31989263	31993579	222	147	243	142	304	133	241	112	1544	Q307Y2	1 × 10^-159	Putative uncharacterized protein
Glyma20 g21970.1	-	31790681	31793219	140	130	165	121	297	160	229	181	1423	Q9LSW5	5 × 10^-39	Nicotiana lesion-inducing like
Glyma20 g22600.1	+	32546273	32550838	224	121	247	171	213	103	131	127	1337	Q53VM0	0	Ser/Thr protein kinase - Lotus japonicus
Glyma20 g17960.1	-	25068695	25074232	205	103	236	106	190	136	158	122	1256	Q9 M8Z5	0	Putative GTPase
Glyma20 g20010.1	+	28403441	28407180	254	103	148	109	266	124	130	92	1226	Q8VXK6	1 × 10^-47	F6 protein

Listed in this table are the 10 genes with the most number of uniquely mapped reads contributing to transcript counts (total reads). A1 to A4 correspond to LoPro stages one to four, and B1 to B4 correspond to HiPro stages one to four. na = not applicable, no significant alignment

ISSN: 1471-2229