Figure 6

Soybase Gbrowse HTTS seed development transcript coverage for Glyma20 g18980. Two different GBrowse annotation tracks displayed at http://soybase.org/gbrowse provide information on coverage depth and location of mapped read counts in relation to the soybean genome sequence. (A) Depicted here is a ~14 kb region from chromosome 20 showing the Glyma20 g18980 gene model "acetyl-CoA c-acyltransferase". Regions with TIGR TA EST data are shown under the "Glycine max 2" track. The "seed development coverage depth" track shows locations and counts of uniquely mapped HTTS reads. The coverage depth track shows the extent of redundancy in coverage at any nucleotide location. (B) The "seed development transcript count" track shows a colored histogram of relative expression counts in each of the eight libraries in this study: A1 to A4 correspond to LoPro stages one to four, and B1 to B4 correspond to HiPro stages one to four. Histograms for each gene are centered under their corresponding gene model.