TY - JOUR AU - Aubourg, S. AU - Boudet, N. AU - Kreis, M. AU - Lecharny, A. PY - 2000 DA - 2000// TI - In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants JO - Plant Mol Biol VL - 42 UR - https://doi.org/10.1023/A:1006352315928 DO - 10.1023/A:1006352315928 ID - Aubourg2000 ER - TY - JOUR AU - Small, I. AU - Peeters, N. PY - 2000 DA - 2000// TI - The PPR motif: A TPR-related motif prevalent in plant organellar proteins JO - trends Biochem Sci VL - 25 UR - https://doi.org/10.1016/S0968-0004(99)01520-0 DO - 10.1016/S0968-0004(99)01520-0 ID - Small2000 ER - TY - JOUR AU - Lurin, C. AU - Andres, C. AU - Aubourg, S. AU - Bellaoui, M. AU - Bitton, F. AU - Bruyere, C. AU - Caboche, M. AU - Debast, C. AU - Gualberto, J. AU - Hoffmann, B. AU - Lecharny, A. AU - Le Ret, M. AU - Martin-Magniette, M. L. AU - Mireau, H. AU - Peeters, N. AU - Renou, J. P. AU - Szurek, B. AU - Taconnat, L. AU - Small, I. PY - 2004 DA - 2004// TI - Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis JO - Plant Cell VL - 16 UR - https://doi.org/10.1105/tpc.104.022236 DO - 10.1105/tpc.104.022236 ID - Lurin2004 ER - TY - JOUR AU - O'Toole, N. AU - Hattori, M. AU - Andres, C. AU - Iida, K. AU - Lurin, C. AU - Schmitz-Linneweber, C. AU - Sugita, M. AU - Small, I. PY - 2008 DA - 2008// TI - On the expansion of the pentatricopeptide repeat gene family in plants JO - Mol Biol Evol VL - 25 UR - https://doi.org/10.1093/molbev/msn057 DO - 10.1093/molbev/msn057 ID - O'Toole2008 ER - TY - JOUR AU - Saha, D. AU - Prasad, A. M. AU - Srinivasan, R. PY - 2007 DA - 2007// TI - Pentatricopeptide repeat proteins and their emerging roles in plants JO - Plant Physiol Biochem VL - 45 UR - https://doi.org/10.1016/j.plaphy.2007.03.026 DO - 10.1016/j.plaphy.2007.03.026 ID - Saha2007 ER - TY - JOUR AU - Schmitz-Linneweber, C. AU - Small, I. PY - 2008 DA - 2008// TI - Pentatricopeptide repeat proteins: a socket set for organelle gene expression JO - Trends Plant Sci VL - 13 UR - https://doi.org/10.1016/j.tplants.2008.10.001 DO - 10.1016/j.tplants.2008.10.001 ID - Schmitz-Linneweber2008 ER - TY - JOUR AU - Andres, C. AU - Lurin, C. AU - Small, I. PY - 2007 DA - 2007// TI - The multifarious roles of PPR proteins in plant mitochondrial gene expression JO - Physiologia plantarum VL - 129 UR - https://doi.org/10.1111/j.1399-3054.2006.00766.x DO - 10.1111/j.1399-3054.2006.00766.x ID - Andres2007 ER - TY - JOUR AU - Fisk, D. G. AU - Walker, M. B. AU - Barkan, A. PY - 1999 DA - 1999// TI - Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression JO - Embo J VL - 18 UR - https://doi.org/10.1093/emboj/18.9.2621 DO - 10.1093/emboj/18.9.2621 ID - Fisk1999 ER - TY - JOUR AU - Yamazaki, H. AU - Tasaka, M. AU - Shikanai, T. PY - 2004 DA - 2004// TI - PPR motifs of the nucleus-encoded factor, PGR3, function in the selective and distinct steps of chloroplast gene expression in Arabidopsis JO - Plant J VL - 38 UR - https://doi.org/10.1111/j.1365-313X.2004.02035.x DO - 10.1111/j.1365-313X.2004.02035.x ID - Yamazaki2004 ER - TY - JOUR AU - Uyttewaal, M. AU - Arnal, N. AU - Quadrado, M. AU - Martin-Canadell, A. AU - Vrielynck, N. AU - Hiard, S. AU - Gherbi, H. AU - Bendahmane, A. AU - Budar, F. AU - Mireau, H. PY - 2008 DA - 2008// TI - Characterization of Raphanus sativus Pentatricopeptide Repeat Proteins Encoded by the Fertility Restorer Locus for Ogura Cytoplasmic Male Sterility JO - Plant Cell VL - 20 UR - https://doi.org/10.1105/tpc.107.057208 DO - 10.1105/tpc.107.057208 ID - Uyttewaal2008 ER - TY - JOUR AU - Falcon de Longevialle, A. AU - Hendrickson, L. AU - Taylor, N. L. AU - Delannoy, E. AU - Lurin, C. AU - Badger, M. AU - Millar, A. H. AU - Small, I. PY - 2008 DA - 2008// TI - The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana JO - Plant J VL - 56 UR - https://doi.org/10.1111/j.1365-313X.2008.03581.x DO - 10.1111/j.1365-313X.2008.03581.x ID - Falcon de Longevialle2008 ER - TY - JOUR AU - Falcon de Longevialle, A. AU - Meyer, E. H. AU - Andres, C. AU - Taylor, N. L. AU - Lurin, C. AU - Millar, A. H. AU - Small, I. D. PY - 2007 DA - 2007// TI - The Pentatricopeptide Repeat Gene OTP43 Is Required for trans-Splicing of the Mitochondrial nad1 Intron 1 in Arabidopsis thaliana JO - Plant Cell VL - 19 UR - https://doi.org/10.1105/tpc.107.054841 DO - 10.1105/tpc.107.054841 ID - Falcon de Longevialle2007 ER - TY - JOUR AU - Meierhoff, K. AU - Felder, S. AU - Nakamura, T. AU - Bechtold, N. AU - Schuster, G. PY - 2003 DA - 2003// TI - HCF152, an Arabidopsis RNA binding pentatricopeptide repeat protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD RNAs JO - Plant Cell VL - 15 UR - https://doi.org/10.1105/tpc.010397 DO - 10.1105/tpc.010397 ID - Meierhoff2003 ER - TY - JOUR AU - Schmitz-Linneweber, C. AU - Williams-Carrier, R. E. AU - Williams-Voelker, P. M. AU - Kroeger, T. S. AU - Vichas, A. AU - Barkan, A. PY - 2006 DA - 2006// TI - A Pentatricopeptide Repeat Protein Facilitates the trans-Splicing of the Maize Chloroplast rps12 Pre-mRNA JO - Plant Cell VL - 18 UR - https://doi.org/10.1105/tpc.106.046110 DO - 10.1105/tpc.106.046110 ID - Schmitz-Linneweber2006 ER - TY - JOUR AU - Beick, S. AU - Schmitz-Linneweber, C. AU - Williams-Carrier, R. AU - Jensen, B. AU - Barkan, A. PY - 2008 DA - 2008// TI - The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts JO - Mol Cell Biol VL - 28 UR - https://doi.org/10.1128/MCB.00563-08 DO - 10.1128/MCB.00563-08 ID - Beick2008 ER - TY - JOUR AU - Hashimoto, M. AU - Endo, T. AU - Peltier, G. AU - Tasaka, M. AU - Shikanai, T. PY - 2003 DA - 2003// TI - A nucleus-encoded factor, CRR2, is essential for the expression of chloroplast ndhB in Arabidopsis JO - Plant J VL - 36 UR - https://doi.org/10.1046/j.1365-313X.2003.01900.x DO - 10.1046/j.1365-313X.2003.01900.x ID - Hashimoto2003 ER - TY - JOUR AU - Hattori, M. AU - Miyake, H. AU - Sugita, M. PY - 2007 DA - 2007// TI - A Pentatricopeptide repeat protein is required for RNA processing of clpP Pre-mRNA in moss chloroplasts JO - J Biol Chem VL - 282 UR - https://doi.org/10.1074/jbc.M608034200 DO - 10.1074/jbc.M608034200 ID - Hattori2007 ER - TY - JOUR AU - Robbins, J. C. AU - Heller, W. P. AU - Hanson, M. R. PY - 2009 DA - 2009// TI - A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript JO - RNA VL - 15 UR - https://doi.org/10.1261/rna.1533909 DO - 10.1261/rna.1533909 ID - Robbins2009 ER - TY - JOUR AU - Kotera, E. AU - Tasaka, M. AU - Shikanai, T. PY - 2005 DA - 2005// TI - A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts JO - Nature VL - 433 UR - https://doi.org/10.1038/nature03229 DO - 10.1038/nature03229 ID - Kotera2005 ER - TY - JOUR AU - Okuda, K. AU - Myouga, F. AU - Motohashi, R. AU - Shinozaki, K. AU - Shikanai, T. PY - 2007 DA - 2007// TI - Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing JO - Proc Natl Acad Sci USA VL - 104 UR - https://doi.org/10.1073/pnas.0700865104 DO - 10.1073/pnas.0700865104 ID - Okuda2007 ER - TY - JOUR AU - Okuda, K. AU - Chateigner-Boutin, A. L. AU - Nakamura, T. AU - Delannoy, E. AU - Sugita, M. AU - Myouga, F. AU - Motohashi, R. AU - Shinozaki, K. AU - Small, I. AU - Shikanai, T. PY - 2009 DA - 2009// TI - Pentatricopeptide Repeat Proteins with the DYW Motif Have Distinct Molecular Functions in RNA Editing and RNA Cleavage in Arabidopsis Chloroplasts JO - Plant Cell VL - 21 UR - https://doi.org/10.1105/tpc.108.064667 DO - 10.1105/tpc.108.064667 ID - Okuda2009 ER - TY - JOUR AU - Chateigner-Boutin, A. L. AU - Ramos-Vega, M. AU - Guevara-Garcia, A. AU - Andres, C. AU - de la Luz Gutierrez-Nava, M. AU - Cantero, A. AU - Delannoy, E. AU - Jimenez, L. F. AU - Lurin, C. AU - Small, I. AU - Leon, P. PY - 2008 DA - 2008// TI - CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts JO - Plant J VL - 56 UR - https://doi.org/10.1111/j.1365-313X.2008.03634.x DO - 10.1111/j.1365-313X.2008.03634.x ID - Chateigner-Boutin2008 ER - TY - CHAP AU - Zhou, W. AU - Cheng, Y. AU - Yap, A. AU - Chateigner-Boutin, A. L. AU - Delannoy, E. AU - Hammani, K. AU - Small, I. AU - Huang, J. PY - 2008 DA - 2008// TI - The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth BT - Plant J ID - Zhou2008 ER - TY - JOUR AU - Zehrmann, A. AU - Verbitskiy, D. AU - Merwe, J. A. v. a. n. d. e. r. AU - Brennicke, A. AU - Takenaka, M. PY - 2009 DA - 2009// TI - A DYW Domain-Containing Pentatricopeptide Repeat Protein Is Required for RNA Editing at Multiple Sites in Mitochondria of Arabidopsis thaliana JO - Plant Cell VL - 21 UR - https://doi.org/10.1105/tpc.108.064535 DO - 10.1105/tpc.108.064535 ID - Zehrmann2009 ER - TY - JOUR AU - Rivals, E. AU - Bruyere, C. AU - Toffano-Nioche, C. AU - Lecharny, A. PY - 2006 DA - 2006// TI - Formation of the Arabidopsis pentatricopeptide repeat family JO - Plant Physiol VL - 141 UR - https://doi.org/10.1104/pp.106.077826 DO - 10.1104/pp.106.077826 ID - Rivals2006 ER - TY - JOUR AU - McCauley, D. E. AU - Olson, M. S. PY - 2008 DA - 2008// TI - Do Recent Findings in Plant Mitochondrial Molecular and Population Genetics Have Implications for the Study of Gynodioecy and Cyto-Nuclear Conflict? JO - Evolution Int J Org Evolution VL - 62 UR - https://doi.org/10.1111/j.1558-5646.2008.00363.x DO - 10.1111/j.1558-5646.2008.00363.x ID - McCauley2008 ER - TY - CHAP AU - Havey, M. J. ED - Daniell, H. ED - Chase, C. PY - 2004 DA - 2004// TI - The use of cytoplasmic male sterility for hybrid seed production BT - Molecular Biology and Biotechnology of Plant Organelles UR - https://doi.org/10.1007/978-1-4020-3166-3_23 DO - 10.1007/978-1-4020-3166-3_23 ID - Havey2004 ER - TY - JOUR AU - Chase, C. D. PY - 2007 DA - 2007// TI - Cytoplasmic male sterility: a window to the world of plant mitochondrial-nuclear interactions JO - Trends Genet VL - 23 UR - https://doi.org/10.1016/j.tig.2006.12.004 DO - 10.1016/j.tig.2006.12.004 ID - Chase2007 ER - TY - JOUR AU - Bentolila, S. AU - Alfonso, A. A. AU - Hanson, M. R. PY - 2002 DA - 2002// TI - A pentatricopeptide repeat-containing gene restores fertility to cytoplasmic male-sterile plants JO - Proc Natl Acad Sci USA VL - 99 UR - https://doi.org/10.1073/pnas.102301599 DO - 10.1073/pnas.102301599 ID - Bentolila2002 ER - TY - JOUR AU - Kazama, T. AU - Toriyama, K. PY - 2003 DA - 2003// TI - A pentatricopeptide repeat-containing gene that promotes the processing of aberrant atp6 RNA of cytoplasmic male-sterile rice JO - FEBS Lett VL - 544 UR - https://doi.org/10.1016/S0014-5793(03)00480-0 DO - 10.1016/S0014-5793(03)00480-0 ID - Kazama2003 ER - TY - JOUR AU - Komori, T. AU - Ohta, S. AU - Murai, N. AU - Takakura, Y. AU - Kuraya, Y. AU - Suzuki, S. AU - Hiei, Y. AU - Imaseki, H. AU - Nitta, N. PY - 2004 DA - 2004// TI - Map-based cloning of a fertility restorer gene, Rf-1, in rice (Oryza sativa L.) JO - Plant J VL - 37 UR - https://doi.org/10.1046/j.1365-313X.2003.01961.x DO - 10.1046/j.1365-313X.2003.01961.x ID - Komori2004 ER - TY - JOUR AU - Akagi, H. AU - Nakamura, A. AU - Yokozeki-Misono, Y. AU - Inagaki, A. AU - Takahashi, H. AU - Mori, K. AU - Fujimura, T. PY - 2004 DA - 2004// TI - Positional cloning of the rice Rf-1 gene, a restorer of BT-type cytoplasmic male sterility that encodes a mitochondria-targeting PPR protein JO - Theor Appl Genet VL - 108 UR - https://doi.org/10.1007/s00122-004-1591-2 DO - 10.1007/s00122-004-1591-2 ID - Akagi2004 ER - TY - JOUR AU - Brown, G. G. AU - Formanova, N. AU - Jin, H. AU - Wargachuk, R. AU - Dendy, C. AU - Patil, P. AU - Laforest, M. AU - Zhang, J. AU - Cheung, W. Y. AU - Landry, B. S. PY - 2003 DA - 2003// TI - The radish Rfo restorer gene of Ogura cytoplasmic male sterility encodes a protein with multiple pentatricopeptide repeats JO - Plant J VL - 35 UR - https://doi.org/10.1046/j.1365-313X.2003.01799.x DO - 10.1046/j.1365-313X.2003.01799.x ID - Brown2003 ER - TY - JOUR AU - Desloire, S. AU - Gherbi, H. AU - Laloui, W. AU - Marhadour, S. AU - Clouet, V. AU - Cattolico, L. AU - Falentin, C. AU - Giancola, S. AU - Renard, M. AU - Budar, F. AU - Small, I. AU - Caboche, M. AU - Delourme, R. AU - Bendahmane, A. PY - 2003 DA - 2003// TI - Identification of the fertility restoration locus, Rfo, in radish, as a member of the pentatricopeptide-repeat protein family JO - EMBO Rep VL - 4 UR - https://doi.org/10.1038/sj.embor.embor848 DO - 10.1038/sj.embor.embor848 ID - Desloire2003 ER - TY - JOUR AU - Koizuka, N. AU - Imai, R. AU - Fujimoto, H. AU - Hayakawa, T. AU - Kimura, Y. AU - Kohno-Murase, J. AU - Sakai, T. AU - Kawasaki, S. AU - Imamura, J. PY - 2003 DA - 2003// TI - Genetic characterization of a pentatricopeptide repeat protein gene, orf687, that restores fertility in the cytoplasmic male-sterile Kosena radish JO - Plant J VL - 34 UR - https://doi.org/10.1046/j.1365-313X.2003.01735.x DO - 10.1046/j.1365-313X.2003.01735.x ID - Koizuka2003 ER - TY - JOUR AU - Kato, H. AU - Tezuka, K. AU - Feng, Y. Y. AU - Kawamoto, T. AU - Takahashi, H. AU - Mori, K. AU - Akagi, H. PY - 2007 DA - 2007// TI - Structural diversity and evolution of the Rf-1 locus in the genus Oryza JO - Heredity VL - 99 UR - https://doi.org/10.1038/sj.hdy.6801026 DO - 10.1038/sj.hdy.6801026 ID - Kato2007 ER - TY - JOUR AU - Wang, Z. AU - Zou, Y. AU - Li, X. AU - Zhang, Q. AU - Chen, L. AU - Wu, H. AU - Su, D. AU - Chen, Y. AU - Guo, J. AU - Luo, D. AU - Long, Y. AU - Zhong, Y. AU - Liu, Y. G. PY - 2006 DA - 2006// TI - Cytoplasmic Male Sterility of Rice with Boro II Cytoplasm Is Caused by a Cytotoxic Peptide and Is Restored by Two Related PPR Motif Genes via Distinct Modes of mRNA Silencing JO - Plant Cell VL - 18 UR - https://doi.org/10.1105/tpc.105.038240 DO - 10.1105/tpc.105.038240 ID - Wang2006 ER - TY - JOUR AU - Touzet, P. AU - Budar, F. PY - 2004 DA - 2004// TI - Unveiling the molecular arms race between two conflicting genomes in cytoplasmic male sterility? JO - Trends Plant Sci VL - 9 UR - https://doi.org/10.1016/j.tplants.2004.10.001 DO - 10.1016/j.tplants.2004.10.001 ID - Touzet2004 ER - TY - JOUR AU - Michelmore, R. W. AU - Meyers, B. C. PY - 1998 DA - 1998// TI - Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process JO - Genome Res VL - 8 ID - Michelmore1998 ER - TY - JOUR AU - Meyers, B. C. AU - Kozik, A. AU - Griego, A. AU - Kuang, H. AU - Michelmore, R. W. PY - 2003 DA - 2003// TI - Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis JO - Plant Cell VL - 15 UR - https://doi.org/10.1105/tpc.009308 DO - 10.1105/tpc.009308 ID - Meyers2003 ER - TY - JOUR AU - Geddy, R. AU - Brown, G. G. PY - 2007 DA - 2007// TI - Genes encoding pentatricopeptide repeat (PPR) proteins are not conserved in location in plant genomes and may be subject to diversifying selection JO - BMC Genomics VL - 8 UR - https://doi.org/10.1186/1471-2164-8-130 DO - 10.1186/1471-2164-8-130 ID - Geddy2007 ER - TY - JOUR AU - Bonnet, A. PY - 1977 DA - 1977// TI - Breeding in France of a radish F1 hybrid obtained by use of cytoplasmic male sterility JO - Eucarpia Cruciferae Newslett VL - 2 ID - Bonnet1977 ER - TY - STD TI - Noe L, Kucherov G: YASS: enhancing the sensitivity of DNA similarity search. Nucleic Acids Res. 2005, W540-3. 10.1093/nar/gki478. 33 Web Server ID - ref43 ER - TY - JOUR AU - Burge, C. B. AU - Karlin, S. PY - 1998 DA - 1998// TI - Finding the genes in genomic DNA JO - Curr Opin Struct Biol VL - 8 UR - https://doi.org/10.1016/S0959-440X(98)80069-9 DO - 10.1016/S0959-440X(98)80069-9 ID - Burge1998 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schaffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - JOUR AU - Small, I. AU - Peeters, N. AU - Legeai, F. AU - Lurin, C. PY - 2004 DA - 2004// TI - Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences JO - Proteomics VL - 4 UR - https://doi.org/10.1002/pmic.200300776 DO - 10.1002/pmic.200300776 ID - Small2004 ER - TY - JOUR AU - Emanuelsson, O. AU - Brunak, S. AU - von Heijne, G. AU - Nielsen, H. PY - 2007 DA - 2007// TI - Locating proteins in the cell using TargetP, SignalP and related tools JO - Nat Protoc VL - 2 UR - https://doi.org/10.1038/nprot.2007.131 DO - 10.1038/nprot.2007.131 ID - Emanuelsson2007 ER - TY - JOUR AU - Etherington, G. J. AU - Dicks, J. AU - Roberts, I. N. PY - 2005 DA - 2005// TI - Recombination Analysis Tool (RAT): a program for the high-throughput detection of recombination JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bth500 DO - 10.1093/bioinformatics/bth500 ID - Etherington2005 ER - TY - JOUR AU - Giancola, S. AU - Rao, Y. AU - Chaillou, S. AU - Hiard, S. AU - Martin-Canadell, A. AU - Pelletier, G. AU - Budar, F. PY - 2007 DA - 2007// TI - Cytoplasmic suppression of Ogura cytoplasmic male sterility in European natural populations of Raphanus raphanistrum JO - Theor Appl Genet VL - 114 UR - https://doi.org/10.1007/s00122-007-0520-6 DO - 10.1007/s00122-007-0520-6 ID - Giancola2007 ER - TY - JOUR AU - Zhang, Y. AU - Cheng, Y. T. AU - Bi, D. AU - Palma, K. AU - Li, X. PY - 2005 DA - 2005// TI - MOS2, a protein containing G-patch and KOW motifs, is essential for innate immunity in Arabidopsis thaliana JO - Curr Biol VL - 15 UR - https://doi.org/10.1016/j.cub.2005.09.038 DO - 10.1016/j.cub.2005.09.038 ID - Zhang2005 ER - TY - JOUR AU - Seah, S. AU - Telleen, A. C. AU - Williamson, V. M. PY - 2007 DA - 2007// TI - Introgressed and endogenous Mi-1 gene clusters in tomato differ by complex rearrangements in flanking sequences and show sequence exchange and diversifying selection among homologues JO - Theor Appl Genet VL - 114 UR - https://doi.org/10.1007/s00122-007-0519-z DO - 10.1007/s00122-007-0519-z ID - Seah2007 ER - TY - JOUR AU - Noel, L. AU - Moores, T. L. AU - Biezen, E. A. v. a. n. D. e. r. AU - Parniske, M. AU - Daniels, M. J. AU - Parker, J. E. AU - Jones, J. D. PY - 1999 DA - 1999// TI - Pronounced intraspecific haplotype divergence at the RPP5 complex disease resistance locus of Arabidopsis JO - Plant Cell VL - 11 UR - https://doi.org/10.1105/tpc.11.11.2099 DO - 10.1105/tpc.11.11.2099 ID - Noel1999 ER - TY - JOUR AU - Wicker, T. AU - Yahiaoui, N. AU - Keller, B. PY - 2007 DA - 2007// TI - Illegitimate recombination is a major evolutionary mechanism for initiating size variation in plant resistance genes JO - Plant J VL - 51 UR - https://doi.org/10.1111/j.1365-313X.2007.03164.x DO - 10.1111/j.1365-313X.2007.03164.x ID - Wicker2007 ER - TY - CHAP AU - Peterson, D. AU - Tomkins, J. AU - Frisch, D. AU - Wing, R. AU - Paterson, A. PY - 2000 DA - 2000// TI - Construction of plant bacterial artificial chromosome (BAC) libraries: an illustrated guide BT - Journal of Agricultural Genomics ID - Peterson2000 ER - TY - JOUR AU - Dellaporta, J. AU - Wood, J. AU - Hicks, J. PY - 1983 DA - 1983// TI - A plant DNA minipreparation: Version II JO - Plant Mol Biol Rep VL - 1 UR - https://doi.org/10.1007/BF02712670 DO - 10.1007/BF02712670 ID - Dellaporta1983 ER - TY - JOUR AU - Burge, C. AU - Karlin, S. PY - 1997 DA - 1997// TI - Prediction of complete gene structures in human genomic DNA JO - J Mol Biol VL - 268 UR - https://doi.org/10.1006/jmbi.1997.0951 DO - 10.1006/jmbi.1997.0951 ID - Burge1997 ER - TY - STD TI - New GENSCAN Web Server at MIT. [http://genes.mit.edu/GENSCAN.html] UR - http://genes.mit.edu/GENSCAN.html ID - ref57 ER - TY - STD TI - atgc PPR. [http://atgc.lirmm.fr/PPR] UR - http://atgc.lirmm.fr/PPR ID - ref58 ER - TY - CHAP AU - Uricaru, R. AU - Bréhélin, L. AU - Rivals, E. ED - Brun, C. ED - Didier, G. PY - 2007 DA - 2007// TI - A new type of Hidden Markov Models to predict complex motif organization in protein sequences BT - Proceeding of Journées Ouvertes Biologie Informatique Mathématiques (JOBIM): Marseille ID - Uricaru2007 ER - TY - STD TI - Predotar v. 1.03. [http://urgi.versailles.inra.fr/predotar/predotar.html] UR - http://urgi.versailles.inra.fr/predotar/predotar.html ID - ref60 ER - TY - STD TI - TargetP 1.1 server. [http://www.cbs.dtu.dk/services/TargetP] UR - http://www.cbs.dtu.dk/services/TargetP ID - ref61 ER - TY - STD TI - YASS: genomic DNA/RNA similarity search tool. [http://bioinfo.lifl.fr/yass/yass.php] UR - http://bioinfo.lifl.fr/yass/yass.php ID - ref62 ER - TY - STD TI - Phylogeny.fr. [http://www.phylogeny.fr] UR - http://www.phylogeny.fr ID - ref63 ER - TY - STD TI - Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O: Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008, W465-9. 10.1093/nar/gkn180. 36 Web Server ID - ref64 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: multiple sequence alignment with high accuracy and high throughput JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh340 DO - 10.1093/nar/gkh340 ID - Edgar2004 ER - TY - JOUR AU - Castresana, J. PY - 2000 DA - 2000// TI - Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis JO - Mol Biol Evol VL - 17 UR - https://doi.org/10.1093/oxfordjournals.molbev.a026334 DO - 10.1093/oxfordjournals.molbev.a026334 ID - Castresana2000 ER - TY - JOUR AU - Anisimova, M. AU - Gascuel, O. PY - 2006 DA - 2006// TI - Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative JO - Syst Biol VL - 55 UR - https://doi.org/10.1080/10635150600755453 DO - 10.1080/10635150600755453 ID - Anisimova2006 ER - TY - JOUR AU - Guindon, S. AU - Gascuel, O. PY - 2003 DA - 2003// TI - A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood JO - Syst Biol VL - 52 UR - https://doi.org/10.1080/10635150390235520 DO - 10.1080/10635150390235520 ID - Guindon2003 ER - TY - JOUR AU - Waterhouse, A. M. AU - Procter, J. B. AU - Martin, D. M. AU - Clamp, M. AU - Barton, G. J. PY - 2009 DA - 2009// TI - Jalview Version 2--a multiple sequence alignment editor and analysis workbench JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp033 DO - 10.1093/bioinformatics/btp033 ID - Waterhouse2009 ER - TY - JOUR AU - Chevenet, F. AU - Brun, C. AU - Banuls, A. L. AU - Jacq, B. AU - Christen, R. PY - 2006 DA - 2006// TI - TreeDyn: towards dynamic graphics and annotations for analyses of trees JO - BMC Bioinformatics VL - 7 UR - https://doi.org/10.1186/1471-2105-7-439 DO - 10.1186/1471-2105-7-439 ID - Chevenet2006 ER -