Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaeaL.)

Zhao, Chuan-Zhi; Xia, Han; Frazier, Taylor Price; Yao, Ying-Yin; Bi, Yu-Ping; Li, Ai-Qin; Li, Meng-Jun; Li, Chang-Sheng; Zhang, Bao-Hong; Wang, Xing-Jun

doi:10.1186/1471-2229-10-3

BMC Plant Biology

Table 1 Conserved miRNAs from peanut

From: Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaeaL.)

miRNA family	Name	Sequence(5'-3')	Length (nt)	Reference miRNA	Conserved in other plants				Reads
					ath	ptc	vvi	osa
156/157	ahy-MIR156a	ugacagaagagagugagcac	20	ath-miR156a	++	++	++	++	17058
	ahy-MIR156b	ugacagaagagagugagcaca	21	bna-miR156a	+	+	+	+	255
	ahy-MIR156c	cugacagaagauagagagcac	21	smo-miR156b	+	+	+	+	43
	ahy-MIR156e	ugacagaggagagugagcac	20	vvi-miR156e	+	+	++	+	8
	ahy-MIR156 g	cgacagaagagagugagcac	20	ath-miR156 g	++	+	+	+	15
	ahy-MIR156 h	ugacagaagaaagagagcac	20	ath-miR156 h	++	+	+	+	4
	ahy-MIR156k	ugacagaagagagggagcac	20	ptc-miR156k	+	++	++	+	69
	ahy-MIR156f	uugacagaagaaagagagcac	21	smo-MIR156c	+	+	+	+	4
	ahy-MIR157a	uugacagaagauagagagcac	21	ath-miR157a	++	++	++	+	95381
	ahy-MIR157d	ugacagaagauagagagcac	20	ath-miR157d	++	+	++	+	3967
	ahy-MIR157k	ugacagaagagagcgagcac	20	zma-miR156k	+	+	+	+	67
159	ahy-MIR159a	uuuggauugaagggagcucua	21	ath-miR159a	++	++	++	+	66
	ahy-MIR159b	uuuggauugaagggagcucuu	21	ath-miR159b	++	+	+	+	41
	ahy-MIR319a	uuggacugaagggagcucccu	21	ath-miR319a	++	+	+	+	12
	ahy-MIR319b	uuggacugaagggagcuccc	20	mtr-miR319	+	++	+	+	5
160	ahy-MIR160a	ugccuggcucccuguaugcca	21	ath-miR160a	++	++	++	++	41
	ahy-MIR160b	ugccuggcucccugaaugcca	21	osa-miR160f	+	++	++	++	4
162	ahy-MIR162a	ucgauaaaccucugcauccag	21	ath-miR162a	++	++	++	++	94
164	ahy-MIR164a	uggagaagcagggcacgugca	21	ath-miR164a	++	++	++	++	4116
	ahy-MIR164d	uggagaagcagggcacgugcu	21	osa-miR164d	+	+	+	++	88
	ahy-MIR164c	uggagaagcagggcacgugcg	21	ath-miR164c	++	+	+	+	4
	ahy-MIR164d	uggagaagcaggguacgugca	21	osa-miR164c	+	+	+	++	1
166	ahy-MIR165a	ucggaccaggcuucauccccc	21	ath-miR165a	++	+	+	+	40
	ahy-MIR166a	ucggaccaggcuucauucccc	21	ath-miR166a	++	++	++	++	9577
	ahy-MIR166d	ucggaccaggcuucauuccccu	22	vvi-miR166d	+	+	++	+	9
	ahy-MIR166 g	ucggaccaggcuucauuccuc	21	osa-miR166 g	+	+	++	++	3647
	ahy-MIR166 h	ucggaccaggcuucauuccc	20	zma-miR166 h	+	+	+	+	8585
	ahy-MIR166j	ucggaucaggcuucauuccuc	21	osa-miR166j	+	+	+	++	8
	ahy-MIR166 m	ucggaccaggcuucauucccu	21	osa-miR166 m	+	+	+	++	35
	ahy-MIR166n	ucggaccaggcuucauuccuu	21	ptc-miR166n	+	++	+	+	13
	ahy-MIR166e	ucgaaccaggcuucauucccc	21	osa-MIR166e	+	+	+	++	3
	ahy-MIR166k	ucggaccaggcuucaaucccu	21	osa-miR166k	+	+	+	++	1
	ahy-MIR166b	ucggaccaggcuucauuccccc	22	vvi-miR166c	+	+	++	+	5
167	ahy-MIR167a	ugaagcugccagcaugaucua	21	ath-miR167a	++	++	++	++	2572
	ahy-MIR167b	ugaagcugccagcaugaucuaa	22	bna-miR167a	+	+	+	+	34
	ahy-MIR167c	ugaagcugccagcaugaucuc	21	vvi-miR167c	+	+	++	+	15
	ahy-MIR167d	ugaagcugccagcaugaucugg	22	ath-miR167d	+	+	+	+	224
	ahy-MIR167e	ugaagcugccagcaugaucug	21	osa-miR167d	+	++	++	+	34
	ahy-MIR167f	ugaagcugccagcaugaucuu	21	ptc-miR167f	+	++	+	+	8767
168	ahy-MIR168a	ucgcuuggugcaggucgggaa	21	ath-miR168a	++	++	++	+	19898
	ahy-MIR168b	ucgcuuggugcagaucgggac	21	osa-miR168a	+	+	+	++	86
169	ahy-MIR169b	cagccaaggaugacuugccgg	21	ath-miR169b	++	++	++	++	66
	ahy-MIR169e	uagccaaggaugacuugccgg	21	osa-miR169e	+	+	+	++	1
	ahy-MIR169a	cagccaaggaugacuugccga	21	ath-miR169a	++	++	++	++	1
	ahy-MIR169 m	gagccaaggaugacuugccgg	21	vvi-miR169 m	+	+	++	+	1
171	ahy-MIR171b	ugauugagccgugccaauauc	21	osa-miR171b	+	++	+	++	26
	ahy-MIR171c	agauugagccgcgccaauauc	21	ptc-miR171c	+	++	+	+	1
	ahy-MIR171d	ugauugagccgcgucaauauc	21	vvi-miR171b	+	+	++	+	5
	ahy-MIR171f	uugagccgcgccaauaucacu	21	vvi-miR171f	+	+	++	+	3
	ahy-MIR171e	uugagccgugccaauaucac	20	zma-miR171b	+	+	+	+	1
	ahy-MIR171a	uugagccgugccaauaucaca	21	zma-miR171f	+	+	+	+	4
172	ahy-MIR172a	agaaucuugaugaugcugcau	21	ath-miR172a	++	++	++	++	2176
	ahy-MIR172b	agaaucuugaugaugcugca	20	zma-miR172a	+	+	+	+	81
	ahy-MIR172c	agaaucuugaugaugcugcag	21	ath-miR172c	++	+	+	+	58
	ahy-MIR172e	ggaaucuugaugaugcugcau	21	ath-miR172e	++	++	+	++	2
390	ahy-MIR390a	aagcucaggagggauagcgcc	21	ath-miR390a	++	++	++	++	149
393	ahy-MIR393a	uccaaagggaucgcauugaucc	22	ath-miR393a	++	+	++	+	2
	ahy-MIR393b	uccaaagggaucgcauugauc	21	osa-miR393	+	++	+	++	6
	ahy-MIR393c	uccaaagggaucgcauugaucu	22	osa-miR393b	+	+	+	++	1
394	ahy-MIR394a	uuggcauucuguccaccucc	20	ath-miR394a	++	++	++	++	8
396	ahy-MIR396a	uuccacagcuuucuugaacug	21	ath-miR396a	++	++	++	++	221
	ahy-MIR396b	uuccacagcuuucuugaacuu	21	ath-miR396b	++	++	+	++	35
	ahy-MIR396d	uccacaggcuuucuugaacug	21	osa-miR396d	+	+	+	++	1
	ahy-MIR396c	uuccacagcuuucuugaacua	21	vvi-miR396a	+	+	++	+	5
	ahy-MIR396e	uuccacagcuuucuugaacu	20	vvi-miR396b	+	+	++	+	2
397	ahy-MIR397a	ucauugagugcagcguugaug	21	ath-miR397a	++	++	++	++	344
	ahy-MIR397c	ucauugagugcagcguugaugu	22	bna-miR397a	+	+	+	+	5
	ahy-MIR397b	uuauugagugcagcguugaug	21	osa-miR397b	+	+	+	++	1
398	ahy-MIR398b	uguguucucaggucgccccug	21	osa-miR398b	+	++	++	++	12
399	ahy-MIR399e	ugccaaaggagauuugcccag	21	osa-miR399e	+	+	+	++	1
408	ahy-MIR408a	augcacugccucuucccuggc	21	ath-miR408	++	++	++	+	105
	ahy-MIR408b	ugcacugccucuucccuggcu	21	ppt-miR408b	+	+	+	+	5
528	ahy-MIR528	uggaaggggcaugcagaggag	21	osa-miR528				++	3
535	ahy-MIR535	ugacaacgagagagagcacgc	21	ppt-miR535a			+	+	1
894	ahy-MIR894	cguuucacgucggguucacc	20	ppt-miR894					2

The abbreviations represent: ath, Arabidopsis thaliana; ptc, Populus trichocarpa; vvi, Vitis vinifera; osa, Oryza sativa. The plus symbols indicate: ++, miRNA sequences of peanut were exactly identical to those in other species; +, miRNA sequences of peanut were conserved in other species but have variations in some nucleotide positions.

Back to article page

ISSN: 1471-2229

Contact us

General enquiries: journalsubmissions@springernature.com