Patterns of sequence polymorphism in the fleshless berry locus in cultivated and wild Vitis vinifera accessions

Table 2 Sequence polymorphism observed between cultivars Chardonnay and Ugni Blanc mutant on the top of the chromosome 18 (12× genome assembly).

Position on the 12× genome assembly (bp)			Fragment name	Number of extremities sequenced	Sequence Length		Homozygous polymorphic sites between Chardonnay and Ugni Blanc mutant		Chardonnay: number of heterozygous		Ugni Blanc mutant: number of heterozygous
Scaffold	Start	End			Chardonnay	Ugni Blanc mutant*	SNP	INDEL	SNP	INDEL	SNP	INDEL
122	85127	85871	VVC2982A	2	1,553	1,553	0	0	2	0	0	0
122	161551	161929	VV05806A	2	1,168	1,168	0	0	0	0	0	0
122	211001	211674	VVC2974A	1	969	969	0	0	4	0	0	0
122	261445	262084	VV05805A	2	1,562	1,562	0	0	10	0	0	0
122	299201	299664	VVC2967B	2	911	911	0	0	2	0	0	0
122	321452	321822	VV05803A	2	1,077	1,077	0	0	7	0	0	0
122	372496	372799	VV05800A	2	683	683	1	0	2	0	0	0
122	382744	382940	VVC2956A	2	452	876	0	0	2	1	0	0
122	399382	399793	VVC2953A	2	769	1,505	0	0	0	1	0	0
122	429725	431077	VV05799A	2	1,539	1,539	2	0	1	0	0	0
122	497378	497760	VVC2942A	2	933	1,255	0	0	5	1	0	0
122	510613	510723	VV05798A	1	1,464	1,464	0	0	4	0	0	0
122	549494	550104	VV05796A	2	909	909	1	0	2	0	0	0
122	615081	615296	VV05793A	1	407	1,057	0	0	1	1	0	0
122	668381	668534	VV05788A	1	914	1,053	0	0	2	1	0	0
122	702907	703637	VV05785A	1	1,090	1,446	0	0	0	0	0	0
122	776756	777088	VV05782A	1	413	1,434	2	0	2	1	0	0
122	818661	819292	VV05781A	1	830	1,495	0	0	1	1	0	0
122	898379	898848	VV05779A	1	1,565	1,565	1	0	1	0	0	0
122	928463	929045	VV05777A	2	1,030	1,520	1	0	1	1	0	0
122	949921	950653	VV05775A	1	755	1,116	1	0	1	0	0	0
122	1009539	1010696	VVC2869A	1	137	498	0	1	0	1	0	0
122	1054896	1056021	VVC2865A	1	136	136	0	0	1	1	0	0
1	1084916	1085337	VVC15574A	2	161	161	0	0	3	0	0	0
1	1098027	1099246	VVC15572A	2	1,700	1,700	0	0	0	0	0	0
1	1104978	1106307	VVC15571A	2	435	986	0	0	0	0	0	0
				41	23,562	29,638	9	1	54	10	0	0

* The column Ugni Blanc mutant stands for both Ugni Blanc and Ugni Blanc mutant, as no differences were observed between them.
The table lines in bold characters correspond to the sequence fragments below marker VMC2A3.

ISSN: 1471-2229