Table 1 List of the 45 OsCESA/CSL genes identified in rice
From: Expression profiling and integrative analysis of the CESA/CSL superfamily in rice
No. | Genes | Accession Number | Probsetsa | Protein characteristics | ||
|---|---|---|---|---|---|---|
| Â | Â | TIGR Loci | KOME cDNA | Â | Pred Helb | Domainsc |
1 | OsCESA1 | LOC_Os05g08370 | AK100188 | Os.10183.1.S2_at | 8 | Zinc finger, CS (PF03552) |
2 | OsCESA2 | LOC_Os03g59340 | AK069196 | Os.14979.1.S1_at | 6 | Zinc finger, CS (PF03552) |
3 | OsCESA3 | LOC_Os07g24190 | AK073561 | Os.10178.2.S1_a_at | 8 | Zinc finger, CS (PF03552) |
4 | OsCESA4 | LOC_Os01g54620 | AK100475 | Os.18724.2.S1_x_at | 8 | Zinc finger, CS (PF03552) |
5 | OsCESA5 | LOC_Os03g62090 | AK100877 | Os.4857.1.S1_at | 8 | Zinc finger, CS (PF03552) |
6 | OsCESA6 | LOC_Os07g14850 | AK100914 | Os.10926.1.S1_at | 8 | Zinc finger, CS (PF03552) |
7 | OsCESA7 | LOC_Os10g32980 | AK072259 | Os.3206.1.S1_at | 6 | Zinc finger, CS (PF03552) |
8 | OsCESA8 | LOC_Os07g10770 | AK072356 | Os.10176.1.S1_at | 6 | Zinc finger, CS (PF03552) |
9 | OsCESA9 | LOC_Os09g25490 | AK121170 | Os.10206.1.S1_at | 6 | Zinc finger, CS (PF03552) |
10 | OsCESA10 | LOC_Os12g29300 | NF | / | 0 | CS(PF03552) |
11 | OsCESA11 | LOC_Os06g39970 | NF | OsAffx.15853.1.S1_at | 6 | CS(PF03552) |
12 | OsCSLA1 | LOC_Os02g09930 | AK102694 | Os.24972.1.S1_at | 5 | GT family 2 (PF00535) |
13 | OsCSLA2 | LOC_Os10g26630 | NF | Os.15231.1.S1_at | 5 | GT family 2 (PF00535) |
14 | OsCSLA3 | LOC_Os06g12460 | NF | OsAffx.15389.1.S1_at | 5 | GT family 2 (PF00535) |
15 | OsCSLA4 | LOC_Os03g07350 | NF | OsAffx.12764.2.S1_x_at | 5 | GT family 2 (PF00535) |
16 | OsCSLA5 | LOC_Os03g26044 | AK111424 | Os.56873.1.S1_at | 6 | GT family 2 (PF00535) |
17 | OsCSLA6 | LOC_Os02g51060 | AK058756 | Os.6170.1.S1_at | 5 | GT family 2 (PF00535) |
18 | OsCSLA7 | LOC_Os07g43710 | AK122106 | Os.8080.1.S1_at; Os.8080.2.S1_x_at | 6 | GT family 2 (PF00535) |
19 | OsCSLA9 | LOC_Os06g42020 | AK242831 | Os.48268.1.S1_at | 5 | GT family 2 (PF00535) |
20 | OsCSLA11 | LOC_Os08g33740 | NF | OsAffx.6015.1.S1_at | 5 | GT family 2 (PF00535) |
21 | OsCSLC1 | LOC_Os01g56130 | AK110759 | Os.29016.1.S1_at | 5 | GT family 2 (PF00535) |
22 | OsCSLC2 | LOC_Os09g25900 | NF | Os.18770.1.S1_at | 4 | GT family 2 (PF00535) |
23 | OsCSLC3 | LOC_Os08g15420 | AK108045 | Os.55417.1.S1_at | 4 | GT family 2 (PF00535) |
24 | OsCSLC7 | LOC_Os05g43530 | AK243206 | Os.15705.1.S1_x_at | 2 | GT family 2 (PF00535) |
25 | OsCSLC9 | LOC_Os03g56060 | AK121805 | Os.10855.1.S1_at | 3 | GT family 2 (PF00535) |
26 | OsCSLC10 | LOC_Os07g03260 | NF | OsAffx.28245.1.S1_at | 2 | GT family 2 (PF00535) |
27 | OsCSLD1 | LOC_Os10g42750 | AK110534 | Os.46811.1.S1_at | 8 | CS (PF03552) |
28 | OsCSLD2 | LOC_Os06g02180 | AK105393 | Os.25614.1.S1_at | 6 | CS (PF03552) |
29 | OsCSLD3 | LOC_Os08g25710 | NF | OsAffx.17155.1.S1_x_at | 6 | CS (PF03552) |
30 | OsCSLD4 | LOC_Os12g36890 | AK242601 | Os.57510.1.S1_x_at; Os.57510.1.A1_at | 6 | CS (PF03552) |
31 | OsCSLD5 | LOC_Os06g22980 | AK072260 | Os.53359.1.S1_at | 8 | CS (PF03552) |
32 | OsCSLE1 | LOC_Os09g30120 | AK102766 | Os.6165.1.S1_a_at | 5 | CS (PF03552) |
33 | OsCSLE2 | LOC_Os02g49332 | AK101487 | Os.20406.3.S1_x_at; Os.20406.1.S1_a_at | 7 | CS (PF03552) |
34 | OsCSLE6 | LOC_Os09g30130 | AK068464 | / | 8 | CS (PF03552) |
35 | OsCSLF1 | LOC_Os07g36700 | NF | / | 8 | CS (PF03552) |
36 | OsCSLF2 | LOC_Os07g36690 | AK100523 | Os.15704.1.S1_at | 8 | CS (PF03552) |
37 | OsCSLF3 | LOC_Os07g36750 | NF | OsAffx.5550.1.S1_at | 8 | CS (PF03552) |
38 | OsCSLF4 | LOC_Os07g36740 | NF | / | 7 | CS (PF03552) |
39 | OsCSLF6 | LOC_Os08g06380 | AK065259 | Os.9709.1.A1_at; Os.9709.2.S1_at | 9 | CS (PF03552) |
40 | OsCSLF7 | LOC_Os10g20260 | AK110467 | Os.46814.1.S1_at | 7 | CS (PF03552) |
41 | OsCSLF8 | LOC_Os07g36630 | AK067424 | Os.52482.1.S1_at | 8 | CS (PF03552) |
42 | OsCSLF9 | LOC_Os07g36610 | AK242890 | OsAffx.16586.1.S1_x_at | 8 | CS (PF03552) |
43 | OsCSLH1 | LOC_Os10g20090 | AK069071 | Os.11623.1.S1_a_at | 6 | CS (PF03552) |
44 | OsCSLH2 | LOC_Os04g35020 | NF | Os.45970.1.S1_at | 8 | CS (PF03552) |
45 | OsCSLH3 | LOC_Os04g35030 | NF | Os.26822.1.S1_at | 2 | CS (PF03552) |