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Table 1 Occurrence of 7732 SSRs identified in a set of 18,928 non-redundant castor bean ESTs

From: Exploiting EST databases for the development and characterization of EST-SSR markers in castor bean (Ricinus communisL.)

SSR motifs Number of repeats            
  4 5 6 7 8 9 10 11 12 13 14 15 > 15  
A/T        435 288 209 138 119 83 352 1624
C/G        9 14 11 6 4 3 5 52
AC/GT   49 27 11 8 11 3 2   1   2 4 117
AG/CT   623 200 130 81 43 58 29 56 38 17 25 49 1350
AT/TA   181 63 37 40 28 17 28 15 14 6 7 33 469
CG/GC   2   1           3
AAC/GTT 142 41 31 11 5   1       2 233
AAG/CTT 419 184 109 58 42 20 18 17 1    1   869
AAT/ATT 166 96 39 34 2 8 2 2 1    1   351
ACC/GGT 326 125 54 28 7 13   1       554
ACG/CGT 41 18 8 2 3 2         74
ACT/AGT 24 17 8 3 1          53
AGC/GCT 349 135 47 28 22 7 5 1       614
AGG/CCT 177 50 24 19 10 3 1   1      285
ATC/GAT 295 82 30 27 18 6   1 2      461
CCG/CGG 136 34 18 16           204
AAAC/GTTT 12 1             13
AAAG/CTTT 54 24 5 3 4          90
AAAT/ATTT 33 3   1           37
Other Tetra-* 56 17 6           1 80
AAAGA 10    1           11
Other Penta-* 44 5     1         50
Hexa-* 106 19 11 2           138
N        444 302 220 144 123 86 357 1676
NN   855 290 179 129 82 78 59 71 53 23 34 86 1939
NNN 2095 782 368 226 110 59 27 22 5 0 0 2 2 3698
NNNN 155 45 11 4 4 0 0 0 0 0 0 0 1 220
NNNNN 54 5 0 1 0 1 0 0 0 0 0 0 0 61
NNNNNN 106 19 11 2 0 0 0 0 0 0 0 0 0 138
TOTAL 2410 1706 680 412 243 142 549 383 296 197 146 122 446 7732
  1. * The motif with less 10 SSR was not listed.