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Figure 1 | BMC Plant Biology

Figure 1

From: Gene family structure, expression and functional analysis of HD-Zip III genes in angiosperm and gymnosperm forest trees

Figure 1

Cladogram showing the phylogenetic structure of the HD-Zip III gene family. The Neighbour-Joining (NJ) tree of HD-Zip III sequences was constructed from complete amino acid sequences using, with Poisson correction, 1000 bootstraps and pair-wise deletion parameters. Populus trichocarpa (PtHB1 to PtHB8: AY919616.1 to AY919623.1), Arabidopsis thaliana (Rev: AK229561.1, ATHB9: NM_102785.4, ATHB14: NM_129025.3, ATHB8: NM_119441.4, ATHB15: NM_104096.1), Physcomitrella patens (PpHB10 to PpHB14: DQ6567200.1 to DQ6567204.1), Picea glauca (HQ391914 to HQ391917), Pinus taeda (PtaHDZ31 to PtaHDZ35: DQ65720.1 to DQ65724.1), Zinnia elegans (ZeHB-10: AB084380.1, ZeHB-11:, ZeHB-12:, ZeHB-13:), Ginkgo biloba (GbC3HDZ1 ot GbC3HDZ3: DQ385525.1 to DQ385527.1), Taxus globosa (TgC3HDZ1: DQ385530.1, TgC3HDZ2: DQ385531.1), Pseudotsuga menziesii (PmC3HDZ1: DQ385528.1, PmC3HDZ2: DQ385529.1), Oryza sativa (OsHB8: AB374207.1, OsPHX1: AK103283, OsPHX2: AK103284, OsREV1: NM_001057934.1, OsREV2: AK100250.1), Selaginella kraussiana (SKHDZ31: DQ657196.1, SKHDZ32: DQ6571971), Selaginella moellendorffii (SeMHDZ31: DQ657198.1, SeMHDZ32: DQ657199.1). Black triangles are used for P. glauca sequences; bold characters are used for poplar.

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