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Table 6 Pain-1 haplotype models obtained with Satlotyper.

From: Natural diversity of potato (Solanum tuberosum) invertases

Haplotype

cDNA allele or group 1

Haplotype frequency

SNP 528 (b) 2

SNP 552 (a)

SNP 612 (c,d)

SNP 637 (d)

SNP 639 (Stpain1-a)

SNP 718 (a)

SNP 741 (Sa)

SNP 825 (x)

SNP 1050 (P18b)

SNP 1068 (c)

SNP 1544 (a)

A

P18b

0.295

A

T

A

A

C

G

C

T

T

C

C

B

b

0.173

A

T

A

A

C

G

C

T

C

C

C

C

c

0.139

T

T

G

A

C

G

C

T

C

G

C

D

 

0.049

T

T

G

A

C

G

C

T

C

C

C

E

 

0.046

A

T

G

G

C

G

C

C

C

C

C

F

 

0.041

T

T

A

A

C

G

C

T

C

C

C

G

 

0.038

T

T

A

A

C

G

C

T

T

C

C

H

d

0.036

T

T

G

G

C

G

C

T

C

C

C

I

 

0.026

A

T

G

A

C

G

C

T

T

C

C

K

 

0.025

T

T

A

A

C

G

C

T

C

C

A*

L

 

0.024

T

T

G

A

C

G

C

T

C

G

C

M

 

0.018

A

C*

A

A

C

A*

C

T

T

C

C

N

Sa

0.017

T

C*

A

A

C

A*

T*

T

C

C

A*

O

 

0.014

T

C*

A

A

C

A*

C

T

C

C

C

P

 

0.013

A

T

A

A

C

G

T*

T

C

C

C

  1. 1 cDNA allele or allele group that corresponds to the haplotype.
  2. 2 cDNA allele or allele group, for which the SNP is diagnostic, see Table S2 in additional file 6.
  3. Associated SNP alleles are highlighted by *.
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BMC Plant Biology

ISSN: 1471-2229

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