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Table 5 Significantly associated polymorphic sites of CCoAOMT1 and CCoAOMT2 genes identified by GLM, MLM and Logistic Regression (REG) with NDF, OMD, and WSC, respectively

From: Polymorphisms in O-methyltransferase genes are associated with stover cell wall digestibility in European maize (Zea maysL.)

Gene

Trait

Site

Snp/Indel

E/I

aa change

GLM

MLM

REG

CCoAOMT1

NDF

726

C-T

I3

-

X

-

-

 

NDF

944

C-T

I4

-

X

-

-

 

OMD

944

C-T

I4

-

X

-

-

 

WSC

1299

C-G

E5

Ala - Gly

-

-

X

CCoAOMT2

WSC

404

1

I2

-

-

-

X

 

WSC

414

4

I2

-

X

-

X

  1. E: exon; I: intron; aa: Amino Acid.
  2. Site numbers denote bp alignment positions of individual SNPs and starting position of Indels. (Based on reference sequences AY323264 and AY279022, for CCoAOMT1 and CCoAOMT2, respectively).
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BMC Plant Biology

ISSN: 1471-2229

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