Skip to main content

Table 4 Polymorphic sites of COMT associated with DNDF identified by GLM, MLM, and Logistic Regression tests for DNDF

From: Polymorphisms in O-methyltransferase genes are associated with stover cell wall digestibility in European maize (Zea maysL.)

Site

Snp/Indel

E/I

aa change

GLM

MLM

REG

Other trait*

1233

C-G

I

-

-

-

-

WSC

1235

A-T

I

-

-

-

-

WSC

1236

C-G

I

-

-

-

-

WSC

1240

C-T

I

-

-

-

-

WSC

1243

10

I

-

-

-

-

WSC

1261

A-G

I

-

-

-

-

WSC

1296

C-T

I

-

X

X

X

OMD

1331

C-T

I

-

X

X

X

OMD

1377

A-T

I

-

X

X

X

OMD

1381

7

I

-

X

X

X

OMD

1439

A-C

I

-

X

-

X

-

1449

4-8

I

-

X

X

-

-

1547

6

I

-

X

X

X

OMD

1589

A-G

I

-

X

X

X

OMD

1638

1

I

-

X

-

X

OMD

1811

6

I

-

X

X

X

OMD

1902

1

I

-

-

-

X

-

1907

3

I

-

-

-

X

-

1916

A-G

I

-

-

-

X

-

1917

A-C

I

-

X

X

X

-

1918

A-G

I

-

X

X

X

-

1919

C-T

I

-

-

-

X

-

1920

28

I

-

X

X

X

OMD

1948

C-T

I

-

-

-

X

-

1952

C-T

I

-

-

-

X

-

1953

A-T

I

-

-

-

X

-

1954

77

I

-

X

X

X

OMD

2032

A-C

I

--

-

-

X

-

2103

C-T

E2

Ser - Pro

-

-

X

OMD

2178

C-G

E2

His - Asp.

X

X

X

OMD

2185

C-G

E2

Arg - Pro

X

X

X

-

2693

A-C

E2

Syn.

-

-

-

NDF

  1. *All polymorphic sites associated with WSC, OMD and NDF were identified only by Logistic Regression. E: exon; I: intron; aa: Amino Acid; Syn.: Synonymous substitution
  2. Site numbers denote bp alignment positions of individual SNPs and starting position of Indels based on reference sequence AY323283 of Genbank.