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Table 1 Classification of 1250 full-sequenced cDNAs

From: Comparative genomic analysis of 1047 completely sequenced cDNAs from an Arabidopsis-related model halophyte, Thellungiella halophila

classification

number of cDNAs

references

433 salt stress related genes

367

 

   Thellungiella salt stress inducible genes

127

Taji et al., 2004 Plant Physiol

Gong et al., 2005 Plant J.

Wong et al., 2005 Plant Mol Biol.

Taji et al., unpublished data

   salt stress inducible genes in Thellungiella and Arabidopsis

191

 

   constitutive high-expressed genes in Thellungiella compared with Arabidopsis

78

 

   genes encoding Na+ transporter

9

 

   overlapping genes in EST libraries of abiotic stressed plants from Thellungiella

30

 

response to abiotic or biotic stress classified by Gene Ontology a

450

Taji et al., 2009 BMC Plant Biol.

transcription factor classified by Gene Ontology a

285

Taji et al., 2009 BMC Plant Biol.

protein phosphatase 2C

24

Taji et al., 2009 BMC Plant Biol.

total

1126

 

total after elimination of overlapped cDNAs

1047

 
  1. a Gene Ontlogy (GO) terms were obtained using InterPro. According to the GO terms, RTFL clones were classified by using Plant GO Slim http://www.geneontology.org/GO.slims.shtml