Table 2 Target genes for 14 sugarcane miRNA families
From: Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane
miRNA | Target genea | Putative function | Conservationb |
|---|---|---|---|
miR156 | TC96571(1), TC76232(1), CF571975(1), CA188863(1), TC98485(1), TC95509(1), TC87521(1) | Squamosa promoter binding protein (SBP) | Yes |
miR159 | TC94752(4) | Myb protein-like protein | Yes |
| Â | CA229394(3), CA168176(3) | Hypothetical protein | No |
miR167 | CA232593(4), CA292372(4), CA201181(4), CA070734(4), TC109486(4), TC94174(4), TC82328(4), TC76219(4), TC74847(4) | Auxin response factor | Yes |
miR168 | TC85238(4), CA099906(4), TC85149(4), TC74893(4) | ARGONAUTE1 (AGO1)-like protein | Yes |
miR169 | TC106305(4), TC103899(4), TC100837(4) | CCAAT-box transcription factor complex | Yes |
miR319 | TC111376(2) | TCP family transcription factor | Yes |
miR396 | TC97707(3), TC91031(3) | Growth-regulating factor | Yes |
miR408 | CA133327(2), TC105472(2), TC82603(2) | Basic blue copper protein-like protein | Yes |
miR827 | CA186401(0) | SPX domain-containing protein | Yes |
miR437 | CA112342(0), CA093244(0) | protein kinase-like protein | No |
miR444 | CA269598(0) | MIKC MADS-box transcription factor | Yes |
| Â | CA208272 (2), CA282606 (2) | Hypothetical protein | No |
| Â | CA105902 (2), TC90577 (2) | putative nicastrin | No |
miR528 | TC90826(1), TC99902(1), CA213231(1) | Cu2+-binding domain-containing protein | Yes |
miR1128 | TC97663(2), CA146047(2) | Hypothetical protein | No |
miR1432 | CA115772(3) | Calcium-transporting ATPase | Yes |