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Table 4 Characteristics and in silico prediction of non-neutral non-synonymous changes

From: A candidate gene association study on muscat flavor in grapevine (Vitis viniferaL.)

Sites (bp) NC_012011 SNP Amino acid change Amino acid substitutions characteristics SIFT prediction (score)
3763971 SNP 772 (G/A) T131A polar neutral/non-polar neutral tolerated
(1.00)
3762959 SNP 1784 (T/C) S272P polar neutral/non-polar neutral affect protein function (0.00)
3762921 SNP 1822 (G/T) K284N polar basic/polar neutral affect protein function (0.00)
3762761 SNP 1982 (C/T) R306C polar basic/slightly polar neutral affect protein function (0.00)
3760773 SNP 3970 (G/A) T514A polar neutral/non-polar neutral tolerated
(0.85)
3760635 SNP 4108 (G/A) V560I non-polar neutral tolerated
(0.11)
3760608 SNP 4135 (A/G) I569V non-polar neutral tolerated
(0.40)
3760485 SNP 4258 (G/A) R584K polar basic tolerated
(0.31)
3760434 SNP 4309 (C/T) S601F polar neutral/non-polar neutral affect protein function (0.01)
3759957 SNP 4786 (C/T) L716S non-polar neutral/polar neutral low confidence prediction
  1. SNPs are named and scored according to their position on VvDXS ORF of V. vinifera PN40024; sites are referenced to the nucleotide positions relative to locus NC_012011. Low confidence prediction means there were not enough comparisons at that site.