Table 4 Characteristics and in silico prediction of non-neutral non-synonymous changes
From: A candidate gene association study on muscat flavor in grapevine (Vitis viniferaL.)
Sites (bp) NC_012011 | SNP | Amino acid change | Amino acid substitutions characteristics | SIFT prediction (score) |
|---|---|---|---|---|
3763971 | SNP 772 (G/A) | T131A | polar neutral/non-polar neutral | tolerated (1.00) |
3762959 | SNP 1784 (T/C) | S272P | polar neutral/non-polar neutral | affect protein function (0.00) |
3762921 | SNP 1822 (G/T) | K284N | polar basic/polar neutral | affect protein function (0.00) |
3762761 | SNP 1982 (C/T) | R306C | polar basic/slightly polar neutral | affect protein function (0.00) |
3760773 | SNP 3970 (G/A) | T514A | polar neutral/non-polar neutral | tolerated (0.85) |
3760635 | SNP 4108 (G/A) | V560I | non-polar neutral | tolerated (0.11) |
3760608 | SNP 4135 (A/G) | I569V | non-polar neutral | tolerated (0.40) |
3760485 | SNP 4258 (G/A) | R584K | polar basic | tolerated (0.31) |
3760434 | SNP 4309 (C/T) | S601F | polar neutral/non-polar neutral | affect protein function (0.01) |
3759957 | SNP 4786 (C/T) | L716S | non-polar neutral/polar neutral | low confidence prediction |