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Table 3 List of DEGs changed for 20 fold and more in INF library.

From: Whole genome wide expression profiles of Vitis amurensisgrape responding to downy mildew by using Solexa sequencing technology

Gene

Annotation

Stress related function

Accession

Identity

Fold

Upregulated genes

Defence

GSVIVT00025506001

polygalacturonase-inhibiting protein [Vitis labrusca x Vitis Riparia]

inhibits fungal endopolygalacturonases

ACS16072.1

333/333 (100%)

60

GSVIVT00001105001

thaumatin-like protein [Vitis vinifera]

pathogen defence; drought and heat combination

AAQ10092.1

217/225 (96%)

57

GSVIVT00017370001

harpin-induced protein-related/HIN1-related/harpin-responsive protein-related [Arabidopsis thaliana]

pathogen defence; senescence

NP_565634.1

141/267 (52%)

33

GSVIVT00002965001

TMV response-related protein [Zea mays]

Tobacco Mosaic Virus response

ACG48457.1

39/91 (42%)

32

GSVIVT00005362001

glutaredoxin [Populus trichocarpa]

senescence

EEE75685.1

91/155 (58%)

29

GSVIVT00024683001

beta-glucosidase [Rosa hybrid cultivar]

activation of phytoanticipins

BAG13451.1

382/531 (71%)

21

Transport

GSVIVT00001094001

multidrug resistance pump, putative [Ricinus communis]

fungal resistance

EEF51093.1

407/509 (79%)

121

GSVIVT00015121001

mitochondrial dicarboxylate carrier protein, putative [Ricinus Communis]

aluminum tolerance

EEF48606.1

271/324 (83%)

38

GSVIVT00030447001

multidrug resistance protein ABC transporter family protein [Populus Trichocarpa]

Senescence; drought and heat combination

EEE80779.1

64/194 (32%)

25

Signal transduction

GSVIVT00030628001

leucine-rich repeat receptor-like protein kinase [Nicotiana tabacum]

senescence

AAF66615.1

644/923 (69%)

145

GSVIVT00006178001

FERONIA receptor-like kinase [Arabidopsis thaliana]

defence, stresses

ABT18100.1

317/621 (51%)

56

GSVIVT00019504001

MAP3K-like protein kinase [Arabidopsis thaliana]

disease resistance, drought and heat combination

CAB16796.1

184/359 (51%)

52

GSVIVT00002706001

calmodulin-binding protein [Arabidopsis thaliana]

senescence

NP_565379.1

21/45 (46%)

39

GSVIVT00020989001

calcium-binding EF hand family protein [Arabidopsis thaliana]

defence related; senescence; drought and heat combination

NP_568568.1

81/166 (48%)

35

GSVIVT00029809001

ethylene-regulated transcript 2 (ERT2) [Arabidopsis thaliana]

senescence

CAB45883.1

96/204 (47%)

34

GSVIVT00036549001

calmodulin-binding protein [Arabidopsis thaliana]

senescence

NP_565379.1

149/366 (40%)

28

GSVIVT00002973001

calmodulin binding protein-like [Elaeis guineensis]

senescence

ABP04242.1

89/135 (65%)

27

GSVIVT00025017001

BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

disease, cell death

EEF29110.1

415/639 (64%)

26

GSVIVT00000612001

nodulin-like protein [Arabidopsis thaliana]

drought and heat combination

AAC28987.1

397/550 (72%)

23

GSVIVT00033036001

RING-H2 subgroup RHE protein [Populus tremula x Populus alba]

drought and heat combination

AAW33880.1

168/296 (56%)

22

GSVIVT00009150001

PAR-1a [Nicotiana tabacum]

potato virus Y, SAR induce

CAA58733.1

127/178 (71%)

22

GSVIVT00027614001

receptor-protein kinase-like protein [Arabidopsis thaliana]

drought and heat combination

BAA98098.1

632/849 (74%)

20

GSVIVT00030574001

leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana]

senescence

ACN59244.1

317/611 (51%)

20

Transcription

GSVIVT00014947001

zinc-finger protein 1 [Datisca glomerata]

defence, stresses

AAD26942.1

144/246 (58%)

60

GSVIVT00016398001

dehydration-responsive element binding protein 3 [Glycine max]

biotic and abiotic stresses

ABB36646.1

116/187 (62%)

52

GSVIVT00007409001

DRE-binding protein 3b [Gossypium hirsutum]

drought and heat combination

ABB45861.1

134/237 (56%)

22

GSVIVT00020131001

basic helix-loop-helix protein [Nicotiana tabacum]

senescence

BAF30984.1

105/228 (46%)

33

GSVIVT00001092001

Dehydration-responsive element-binding protein 1F, putative [Ricinus communis]

phytohormone, pathogen and environmental stresses

EEF51090.1

143/242 (59%)

30

GSVIVT00007410001

CBF4 transcription factor [Vitis vinifera]

cold stress

ABE96792.1

218/218 (100%)

30

GSVIVT00016403001

jasmonate ZIM domain 1 [Catharanthus roseus]

wounding; herbivory; salinity

ACM89457.1

131/275 (47%)

27

GSVIVT00028041001

AP2 domain class transcription factor [Malus x domestica]

senescence; drought and heat combination

ADE41117.1

172/327 (52%)

26

GSVIVT00027444001

GRAS family transcription factor [Populus trichocarpa]

chitin response

EEE95719.1

446/586 (76%)

26

GSVIVT00006790001

basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana]

fugal resistance related; senescence

NP_568850.1

152/239 (63%)

21

GSVIVT00002446001

WRKY transcription factor 21 [Populus tomentosa x P. bolleana]

senescence,stresses

ACV92023.1

196/364 (53%)

21

Metabolism

GSVIVT00015203001

putative phosphate-induced protein [Nicotiana tabacum]

unidentified

BAA33810.1

243/317 (76%)

229

GSVIVT00016518001

salt responsive protein 2 [Solanum lycopersicum]

drought and heat combination

ACG50004.1

309/464 (66%)

165

GSVIVT00024884001

S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase [Chimonanthus praecox]

biotic and abotic stresses

ABU88887.2

191/377 (50%)

97

GSVIVT00024408001

potein-binding protein, putative [Ricinus communis]

unidentified

EEF27653.1

393/605 (64%)

87

GSVIVT00028930001

ubiquitin-protein ligase, putative [Ricinus communis]

senescence

EEF42248.1

357/602 (59%)

72

GSVIVT00014730001

cytochrome P450 [Populus trichocarpa]

senescence; drought and heat combination

EEE73840.1

261/453 (57%)

70

GSVIVT00000988001

9-cis-epoxycarotenoid dioxygenase 1 [Vitis vinifera]

senescence; defence

AAR11193.1

602/610 (98%)

62

GSVIVT00023009001

ATPP2-A2, putative [Ricinus communis]

unidentified

EEF38353.1

114/158 (72%)

56

GSVIVT00014704001

putative integral membrane protein [Cyanothece sp. CCY0110]

unidentified

EAZ88012.1

53/176 (30%)

51

GSVIVT00018424001

tropinone reductase, putative [Ricinus communis]

senescence; drought and heat combination

EEF38138.1

194/264 (73%)

48

GSVIVT00032938001

aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]

phosphorus deficiency; salt stress

EEF29846.1

306/441 (69%)

39

GSVIVT00024072001

protein phosphatase 2c, putative [Ricinus communis]

senescence

EEF41194.1

254/393 (64%)

37

GSVIVT00015200001

putative phosphate-induced protein [Capsicum chinense]

unidentified

BAG16530.1

186/289 (64%)

37

GSVIVT00022245001

f-box family protein [Populus trichocarpa]

senescence

EEE87327.1

139/345 (40%)

37

GSVIVT00016166001

ATP-dependent DNA helicase [Brevibacillus brevis]

DNA repair

BAH41662.1

16/45 (35%)

36

GSVIVT00024387001

nucleic acid binding protein, putative [Ricinus communis]

oxidative; ABA; abiotic stresses

EEF29282.1

102/164 (62%)

34

GSVIVT00024235001

protein phosphatase 2C [Nicotiana tabacum]

senescence

CAC10358.1

257/429 (59%)

34

GSVIVT00035825001

ubiquitin-protein ligase, putative [Ricinus communis]

senescence

EEF40124.1

572/719 (79%)

32

GSVIVT00019233001

TPA: isoflavone reductase-like protein 3 [Vitis vinifera]

putative defence

CAI56332.1

301/319 (94%)

31

GSVIVT00014029001

TPA_exp: cellulose synthase-like D1 [Oryza sativa]

unidentified

DAA01752.1

999/1171 (85%)

31

GSVIVT00007984001

serine acetyltransferase [Nicotiana plumbaginifolia]

oxidative stress

AAR18403.1

179/307 (58%)

30

GSVIVT00036225001

Beta-expansin 1a precursor, putative [Ricinus communis]

osmotic stress

EEF28288.1

207/259 (79%)

27

GSVIVT00017518001

spotted leaf protein, putative [Ricinus communis]

hypersensitive response; cell death; senescence

EEF38265.1

243/402 (60%)

27

GSVIVT00007452001

wound-induced protein WIN2 precursor, putative [Ricinus communis]

antifungal

EEF31100.1

142/197 (72%)

26

GSVIVT00002450001

UDP-glucose:glucosyltransferase [Lycium barbarum]

drought and heat combination

BAG80556.1

293/464 (63%)

24

GSVIVT00036349001

glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]

drought and heat combination

EEF49428.1

412/531 (77%)

24

GSVIVT00028839001

spotted leaf protein, putative [Ricinus communis]

hypersensitive response; cell death; senescence

EEF52025.1

385/674 (57%)

24

GSVIVT00009741001

f-box family protein [Populus trichocarpa]

senescence

EEE86166.1

93/182 (51%)

24

GSVIVT00019669001

galactinol synthase [Solanum lycopersicum]

oxidative stress; drought; salinity; chilling; heat shock

BAH98060.1

231/316 (73%)

24

GSVIVT00030537001

senescence-associated protein, putative [Medicago truncatula]

Senescence; drought and heat combination

ABD32641.1

99/144 (68%)

23

GSVIVT00001432001

protein phosphatase 2c, putative [Ricinus communis]

senescence; drought and heat combination

EEF34881.1

319/389 (82%)

23

GSVIVT00033193001

galactinol synthase [Capsicum annuum]

oxidative stress; drought; salinity; chilling; heat shock

ABQ44212.1

239/315 (75%)

21

GSVIVT00023109001

ATEXO70H4 (exocyst subunit EXO70 family protein H4); protein binding [Arabidopsis thaliana]

unidentified

NP_187563.1

331/585 (56%)

21

various functions

GSVIVT00017533001

PREDICTED: hypothetical protein [Vitis vinifera]

unidentified

XP_002279648.1

500/500 (100%)

20

GSVIVT00020834001

CW14 [Arabidopsis thaliana]

unidentified

BAA87958.1

300/533 (56%)

23

Downregulated genes

Defence

GSVIVT00016961001

Immunoglobulin/major histocompatibility complex [Medicago truncatula]

disease resistance

ABP03850.1

426/672 (63%)

-164

GSVIVT00014282001

pathogenesis-related like protein [Arabidopsis thaliana]

defence

AAM66077.1

117/215 (54%)

-67

Metabolism

GSVIVT00027449001

(-)-germacrene D synthase [Vitis vinifera]

wounding; methyl jasmonate

AAS66357.1

500/553 (90%)

-164

GSVIVT00027451001

(-)-germacrene D synthase [Vitis vinifera]

wounding; methyl jasmonate

AAS66357.1

503/557 (90%)

-150

GSVIVT00027450001

(-)-germacrene D synthase [Vitis vinifera]

wounding; methyl jasmonate

AAS66357.1

274/319 (85%)

-53

GSVIVT00027456001

(-)-germacrene D synthase [Vitis vinifera]

wounding; methyl jasmonate

AAS66357.1

454/545 (83%)

-22

GSVIVT00014725001

cytochrome P450 [Populus trichocarpa]

pathogen induced

EEE73840.1

299/511 (58%)

-41

GSVIVT00014727001

cytochrome P450 [Populus trichocarpa]

pathogen induced

EEE73840.1

269/447 (60%)

-35

GSVIVT00007099001

thioredoxin x [Populus trichocarpa]

defence; abiotic stresses, senescence

EEE90516.1

98/117 (83%)

-39

GSVIVT00008711001

beta-cyanoalanine synthase [Betula pendula]

cyanide metabolism

AAN86822.1

311/352 (88%)

-36

GSVIVT00037489001

non-specific lipid transfer protein [Vitis vinifera]

defence related

ABA29446.1

119/119 (100%)

-28

GSVIVT00029445001

expansin [Vitis labrusca x Vitis vinifera]

defence related

BAC66695.1

252/252 (100%)

-22

GSVIVT00006300001

UDP-glucosyltransferase, putative [Ricinus communis]

defence related

EEF47681.1

268/466 (57%)

-22

various functions

GSVIVT00005678001

male sterility-related protein [Linum usitatissimum]

unidentified

ACA28679.1

260/503 (51%)

-23

GSVIVT00032599001

hypothetical protein [Vitis vinifera]

unidentified

XP_002284962.1

368/368 (100%)

-22