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Table 1 Apple and Tomato Ripening Genes

From: Use of homologous and heterologous gene expression profiling tools to characterize transcription dynamics during apple fruit maturation and ripening

Tomato_ID

Apple_ID

Gene_annotation

  

cell wall; carbohydrate metabolism; cell wall degredation; fruit softening

SGN-U212775

CN29021

pectate lyase [Malus x domestica]

SGN-U217975

CN25519

xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) precursor (clone tXET-B2) - tomato

SGN-U213213

CN14797

Polygalacturonase 2A precursor (PG-2A) (Pectinase)

SGN-U213444

CN27677

xyloglucan endotransglycosylase (XTR4), putative [Arabidopsis thaliana]

  

defense responses; disease resistance; pathogenesis; wound induced

SGN-U219296

CX022916

ELI3 [Lycopersicon esculentum]

  

hormone responses; auxin responses; IAA responses

SGN-U215673

CN7981

axi 1 protein from Nicotiana tabacum -related [Arabidopsis thaliana]

  

hormone responses; ethylene responses

SGN-U214488

CN24915

ETHYLENE-INDUCIBLE PROTEIN HEVER

SGN-U212804

CN445336

ACC oxidase homolog (Protein E8)

SGN-U214815

CN28691

ethylene response factor 3 [Lycopersicon esculentum]

  

hormone responses; ethylene biosynthesis

SGN-U212786

CN309

ACC oxidase, 1-aminocyclopropane-1-carboxylate oxidase 1 (ACC oxidase 1)

SGN-U212787

CN27

ACC oxidase, 1-aminocyclopropane-1-carboxylate oxidase 1 (ACC oxidase 1)

SGN-U214919

CN309

ACC oxidase, 1-aminocyclopropane-1-carboxylate oxidase [Solanum tuberosum]

SGN-U216896

U73815

ACC synthase, 1-aminocyclopropane-1-carboxylate synthase 2

SGN-U212824

CN1498

S-adenosylmethionine synthetase 1

SGN-U212955

CN14011

S-adenosylmethionine synthetase 3

SGN-U213593

CN1498

S-adenosylmethionine synthetase 2

  

ripening-related

SGN-U213072

CN5470

ripening-related protein [Vitis vinifera]

  

transcription factor

SGN-U213245

CO052409

WIZZ [Nicotiana tabacum]

SGN-U213317

CN791

transcription factor BTF3 (RNA polymerase B transcription factor 3)

SGN-U213318

CN791

transcription factor BTF3 (RNA polymerase B transcription factor 3)

SGN-U213318

CN791

transcription factor BTF3 (RNA polymerase B transcription factor 3)

SGN-U213659

CN27467

TDR4 transcription factor [Lycopersicon esculentum]

SGN-U213840

CN26889

CCR4-associated factor -related [Arabidopsis thaliana]

SGN-U215425

CN8887

bZIP transcription factor BZI-4 [Nicotiana tabacum]

SGN-U215688

CN25810

WRKY family transcription factor [Arabidopsis thaliana]

SGN-U215971

CN1890

myb-related protein TMH27 - tomato

SGN-U217991

CN495178

AP2 domain transcription factor, putative [Arabidopsis thaliana]

SGN-U219020

CN495178

AP2 domain transcription factor, putative [Arabidopsis thaliana]

  1. Twenty-eight genes that are differentially expressed in the ripening of apple and tomato (Alba et al., 2005 and Fei et al., 2006), specifically involved in ethylene biosynthesis and response, cell wall metabolism and transcription factors.