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Table 2

From: Identification of new polymorphic regions and differentiation of cultivated olives (Olea europaea L.) through plastome sequence comparison

Repeat

Number of repeats

Size

Start(1)

Type

% Identity

Region

Gene position

Sequence

1

3

30

9,345

D

86.67

LSC

trnS-GCU-exon

[CA][AC]GGA[GA]AGAGAGGGATTCGAACCCTCG[AG]TA

   

37,281

D

 

LSC

trnS-UGA-exon

 
   

47,117

I

 

LSC

trnS-GGA-exon

 

2

2

31

10,849

D

90.32

LSC

trnG-UCC-exon 2

[AT][AG]A[CA]GATGCGGGTTCGATTCCCGCTA[CT]CCGC

   

38,241

D

 

LSC

trnG-GCC-exon

 

3

1

30

14,401

P

93.33

LSC

atpF - atpH

AAATATGAAAAATA[TC][GA]TATTTTTCATATTT

4

2

45

40,451

D

88.89

LSC

psaB-exon

[AT]TGCAATAGCTA[AG]ATGATG[AG]TG[TA]GCAATATCGGTCAGCCATA[AG]AC

   

42,675

D

 

LSC

psaA-exon

 

5

3

41

45,474

D

92.68

LSC

ycf3-intron

T[CA]CAGAACCGTAC[GA]TGAGATTTTCA[TC]CTCATACGGCTCCTC

   

100,797

D

 

IR

rps12 - trnV-GAC

 
   

122,052

D

 

SSC

ndhA-intron

 

6

2

31

56,736

D

90.32

LSC

atpB - rbcL

T[AT]CTTATTCATCCACTTGAAATTTTCAA[AG][AT]T

   

56,777

I

 

LSC

atpB - rbcL

 

7

1

44

76,926

P

95.45

LSC

psbT - psbN

TTGAAGTAATGAGCCTCCC[CA]ATAT[TG]GGGAGGCTCATTACTTCAA

8

2

30

83,181

D

90

LSC

rps8 - rpl14

AATCTA[CG]T[AT][AC]TTAATCTAGTTCTTAATCTA

   

83,193

D

 

LSC

rps8 - rpl14

 

9

2

30

91,385

TR

90

IR

ycf2-exon

TTTCTTTTTGTC[CT]AA[GC]TCACTTC[TC]TTTTTT

   

91,427

  

IR

ycf2-exon

 

10

2

36

93,791

TR

94.83

IR

ycf2-exon

[AG]ATATTGATG[AC]TAGTGAC[AG]ATATTGATG[AC]TAGTGAC

   

93,827

  

IR

ycf2-exon

 

11

1

48

96,252

P

91.67

IR

ycf15 - trnL-CAA

AGAGCTCGGATCGAATCGGTAT[TA][TG][AC][TA]ATACCGATTCGATCCGAGCTCT

12

2

30

109,623

D

93.33

IR

rrn 4.5 - rrn 5

CATTGTTCAA[AC]TCTTTGACAACA[CT]GAAAAA

   

109,654

D

 

IR

rrn 4.5 - rrn 5

 

13

1

61

110,599

P

95.08

IR

trnR-ACG - trnN-GCU

AGAATTCTCAGATGTACTAGCACTGCATC[AT][AT][AT]GATGCAGTGCTAGTACATCTGAGAATTCT

14

1

36

118944

P

100

SSC

ndhD - psaC

AAAACCCGTGCTCCAAATATTTGGAGCACGGGTTTT

  1. D: direct, I: inverted, P: palindrome, TR: tandem repeat (imperfect).
  2. (1) The start base position of the interspersed repeats and palindromic sequences refers to the cv. Frantoio sequence.
  3. Bold nucleotides refer to the indel P32.