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Table 1 Abundance and length of SSR motifs identified on the olive chloroplast genome.

From: Identification of new polymorphic regions and differentiation of cultivated olives (Olea europaea L.) through plastome sequence comparison

No. of repeats* No. of SSR  
  A C G T AT GA TA AAAT ATAA GAAA CCAAT TAAAC Total
3 - - - - 0 0 0 0 1 1 1 1 4
4 - - - - 0 0 0 1 0 0 0 0 1
5 - - - - 1 1 3 0 0 0 0 0 5
6 141 20 17 161 0 1 0 0 0 0 0 0 340
7 69 8 6 57 0 0 0 0 0 0 0 0 140
8 23 2 0 33 0 0 0 0 0 0 0 0 58
9 20 0 0 19 0 0 0 0 0 0 0 0 39
10 11 1 0 14 0 0 0 0 0 0 0 0 26
11 4 0 0 9 0 0 0 0 0 0 0 0 13
12 5 0 0 7 0 0 0 0 0 0 0 0 12
13 1 0 0 2 0 0 0 0 0 0 0 0 3
14 1 0 0 0 0 0 0 0 0 0 0 0 1
15 1 0 0 0 0 0 0 0 0 0 0 0 1
16 0 0 0 1 0 0 0 0 0 0 0 0 1
Total 276 31 23 303 1 2 3 1 1 1 1 1 644
  1. SSRs analyzed for polymorphism are given in bold. * Mononucleotide SSRs with less than 6 repeats were not determined.
  2. Interspersed repeats and palindromic sequences.
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BMC Plant Biology

ISSN: 1471-2229

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