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Table 1 Summary of H. serrata and P. carinatus 454-EST data

From: Comparison of 454-ESTs from Huperzia serrata and Phlegmariurus carinatus reveals putative genes involved in lycopodium alkaloid biosynthesis and developmental regulation

 

H. serrata

P. carinatus

Total bases

57,028,559 bp

30,498,684 bp

No. of HQ reads

140,930

79,920

Average read length

405 ±129 bp

382 ± 122 bp

No. of contigs

14,085

9,120

Average contig length

608 ± 460 bp

532 ± 380 bp

No. of contigs larger than 500 bp

8,948 (63.5%)

3,020 (33.1%)

No. of singletons

22,678

22,692

Average singleton length

351 ± 165

353 ± 132

No. of singletons above 200 bp

16,879

18,822

No. of unique putative transcripts

36,763

31,812

Annotated sequencesa

16,274 (44.3%)

14,070 (44.2%)

  1. aThe unique putative transcripts were annotated by BLASTX analysis against the NCBI nr database.